An integrated transcriptomic cell atlas of human neural organoids is a dataset published in Nature (2024). On theSindex it has a DataRank of 2.1, placing it in the top 10.3% of the data-sharing corpus. It has been cited 127 times, with 100 citing works in its 1-hop citation network. Its calibrated FAIR score is 67/100.
Ranks in the top 10% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The integrated HNOCA data is available at Zenodo (10.5281/zenodo.11203684) 100”
The paper gives a DOI for the dataset.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The integrated HNOCA data is available at Zenodo (10.5281/zenodo.11203684) 100”
Zenodo is named as a repository holding the data.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“He, Z. Dony, L. & Fleck, J. S. An integrated transcriptomic cell atlas of human neural organoids: cleaned datasets. Zenodo 10.5281/zenodo.11203684 (2023).”— not found in the paper; verdict downgraded
The dataset appears as a reference-list entry in the references section. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The integrated HNOCA data is available at Zenodo (10.5281/zenodo.11203684) 100 and the CellxGene Discover Census ( https://cellxgene.cziscience.com/collections/de379e5f-52d0-498c-9801-0f850823c847 ).”
The statement points at a repository record with a DOI and a repository URL. [majority verdict 'yes' (3/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“Here we integrate 36 single-cell transcriptomic datasets spanning 26 protocols into one integrated human neural organoid cell atlas totalling more than 1.7 million cells 1 – 26 .”
The dataset content and size are stated in running prose only, without an itemised inventory. [majority verdict 'partial' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The integrated HNOCA data is available at Zenodo (10.5281/zenodo.11203684) 100 and the CellxGene Discover Census ( https://cellxgene.cziscience.com/collections/de379e5f-52d0-498c-9801-0f850823c847 ).”
The text gives a route to the data with no stated precondition.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The integrated HNOCA data is available at Zenodo (10.5281/zenodo.11203684) 100 and the CellxGene Discover Census ( https://cellxgene.cziscience.com/collections/de379e5f-52d0-498c-9801-0f850823c847 ).”
The paper describes the action of accessing the data at the URLs but does not apply an explicit access-level label from the standard vocabulary. [majority verdict 'partial' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are not sensitive or human-subject, and no gatekeeper of any kind is mentioned.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“The integrated HNOCA data is available at Zenodo (10.5281/zenodo.11203684) 100 and the CellxGene Discover Census ( https://cellxgene.cziscience.com/collections/de379e5f-52d0-498c-9801-0f850823c847 ).”
The paper states that the data are currently available but does not specify how long they will persist, so it is an availability-timing statement only. [majority verdict 'partial' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format is named for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard is named as applied to the released dataset. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“Braun E Comprehensive cell atlas of the first-trimester developing human brain Science 2023 382 eadf1226 10.1126/science.adf1226”
The paper includes a reference to an external resource with a DOI (the primary brain atlas).
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No licence or terms document is named for the data.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is stated for the snapshot of the data.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“The HNOCA-tools package provides a Python interface for annotation, reference mapping and central downstream analysis steps and is available at https://github.com/devsystemslab/HNOCA-tools .”
A machine-resolvable code repository URL is given for the study's own code.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“This work was supported by Chan Zuckerberg Initiative DAF, an advised fund of the Silicon Valley Community Foundation (grant nos. CZF2019-002440 and CZF2021-237566, to J.G.C. and B.T.).”
An award/grant number (CZF2019-002440) is attached to a named funder. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“We used scPoli 45 for label-aware data integration”
The text names a specific software tool (scPoli) used to produce the data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (README, codebook) is mentioned as accompanying the data, and no variable-definition table exists inside the article for the integrated dataset. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.728
From this paper's citation signal
Citation Network Contribution
1.3
From 62 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 100 citers.
Swiss National Science Foundation
Grant: 192604
European Research Council
Grant: 101054957
Learning and modeling the molecular response of single cells to drug perturbations
NICHD NIH HHS
Grant: T32 HD060549
Swiss National Science Foundation
Grant: 310030
European Commission
Grant: 803441
Great ape organoids to reconstruct uniquely human development
European Commission
Grant: 874606
Molecular atlas of the brain across the human lifespan
European Commission
Grant: 758877
Reconstructing human cortex development and malformation with single-cell transcriptomics
FWCI
20.61
Citation Percentile
1.0%
Citation Trend
Fields of Study
MeSH Terms
Keywords
An integrated transcriptomic cell atlas of human neural organoids: Minimal datasets for mapping
An integrated transcriptomic cell atlas of human neural organoids: Cleaned datasets
An integrated transcriptomic cell atlas of human neural organoids: Minimal datasets for mapping
An integrated transcriptomic cell atlas of human neural organoids: Full Dataset
An integrated transcriptomic cell atlas of human neural organoids: Full Dataset
An integrated transcriptomic cell atlas of human neural organoids: Cleaned datasets