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Spatial transcriptomics at subspot resolution with BayesSpace

Nature Biotechnology(2021)10.1038/s41587-021-00935-2Source: DataRank Database

Spatial transcriptomics at subspot resolution with BayesSpace is a research paper published in Nature Biotechnology (2021). On theSindex it has a DataRank of 0. It has been cited 1,049 times.

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0DataRank · unranked

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Open Access1,049 citations

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Enrichment:Funding (16 grants)Impact (FWCI 47.16)OA: greenTopics (39)Linked Datasets (25)DataCite Reuse (25)IDs (PubMed, PMC, OpenAlex)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
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Accessible (1/2)

Open Access

Interoperable (2/2)

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Reusable (0/3)

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Authors (12)

Matthew R. Stone ORCID,Xing Ren,Jamie Guenthoer,Kimberly S. Smythe ORCID,Thomas H. Pulliam ORCID

Live enrichment

PubMed:34083791 PMC:PMC8763026 OpenAlex:https://openalex.org/W3165120573

U.S. Department of Health & Human Services | NIH | National Cancer Institute

Grant: T32-CA080416

U.S. Department of Health & Human Services | NIH | National Cancer Institute

Grant: P01-CA225517

U.S. Department of Health & Human Services | NIH | National Cancer Institute

Grant: P30-CA015704

U.S. Department of Health & Human Services | National Institutes of Health

Grant: F30-CA254168

U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases

Grant: U19AI128914

U.S. Department of Health & Human Services | NIH | NIH Office of the Director

Grant: S10OD028685

NCI NIH HHS

Grant: F30 CA254168

NCI NIH HHS

Grant: P01 CA225517

NCI NIH HHS

Grant: T32 CA080416

NCI NIH HHS

Grant: P30 CA015704

National Institutes of Health

Grant: 5P01CA225517-02

Immunobiology and Immune Therapy for Merkel Cell Carcinoma

National Institutes of Health

Grant: 3P30CA015704-42S2

Cancer Center Support Grant

National Institutes of Health

Grant: 5F30CA254168-03

Exhaustion mechanisms in Merkel cell polyomavirus-specific T cells

National Institutes of Health

Grant: 5U19AI128914-05

Immune Responses to Malaria and HIV Infection and Immunization

National Institutes of Health

Grant: 5T32CA080416-24

Interdisciplinary Training in Cancer Research

National Institutes of Health

Grant: 1S10OD028685-01

High-Performance Compute Cluster for Comprehensive Cancer and Infectious Diseases Research

FWCI

47.16

Citation Percentile

1.0%

Influential Citations

103

Citation Trend

2020

2021

2022

2023

2024

2025

2026

greenLicense: Springer TDM

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/8763026

GREENhttps://www.ncbi.nlm.nih.gov/pmc/articles/8763026

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/8763026

publisherhttps://www.nature.com/articles/s41587-021-00935-2.pdf

publisherhttps://www.nature.com/articles/s41587-021-00935-2

Fields of Study

Single-cell and spatial transcriptomicsGene expression and cancer classificationMolecular Biology Techniques and ApplicationsMedicineComputer ScienceBiology0301 basic medicine0303 health sciences03 medical and health sciences

MeSH Terms

Bayes TheoremCluster AnalysisSequence Analysis, RNAGene Expression ProfilingSingle-Cell AnalysisTranscriptome

Keywords

Spatial analysisCluster analysisTranscriptomeSpatial contextual awarenessContext (archaeology)Benchmark (surveying)Computer scienceIdentification (biology)Geospatial analysisData miningComputational biologyPattern recognition (psychology)Artificial intelligenceBiologyCartographyGeneGeographyGene expressionGeneticsRemote sensingSequence Analysis, RNAGene Expression ProfilingBayes TheoremSingle-Cell Analysis

Sustainable Development Goals

SDG 0: Sustainable cities and communities

Additional file 1 of Size matters: the impact of nucleus size on results from spatial transcriptomics

10.6084/m9.figshare.22671446.v1figshare

Additional file 1 of Size matters: the impact of nucleus size on results from spatial transcriptomics

10.6084/m9.figshare.22671446figshare

Additional file 2 of Size matters: the impact of nucleus size on results from spatial transcriptomics

10.6084/m9.figshare.22671449.v1figshare

Additional file 2 of Size matters: the impact of nucleus size on results from spatial transcriptomics

10.6084/m9.figshare.22671449figshare

Additional file 3 of Size matters: the impact of nucleus size on results from spatial transcriptomics

10.6084/m9.figshare.22671452.v1figshare

Additional file 3 of Size matters: the impact of nucleus size on results from spatial transcriptomics

10.6084/m9.figshare.22671452figshare

Additional file 4 of Size matters: the impact of nucleus size on results from spatial transcriptomics

10.6084/m9.figshare.22671455figshare

Additional file 4 of Size matters: the impact of nucleus size on results from spatial transcriptomics

10.6084/m9.figshare.22671455.v1figshare

Additional file 5 of Size matters: the impact of nucleus size on results from spatial transcriptomics

10.6084/m9.figshare.22671458.v1figshare

Additional file 5 of Size matters: the impact of nucleus size on results from spatial transcriptomics

10.6084/m9.figshare.22671458figshare

Additional file 1 of Evaluating spatially variable gene detection methods for spatial transcriptomics data

10.6084/m9.figshare.25001619.v1figshare

Additional file 1 of Evaluating spatially variable gene detection methods for spatial transcriptomics data

10.6084/m9.figshare.25001619figshare

Additional file 2 of Evaluating spatially variable gene detection methods for spatial transcriptomics data

10.6084/m9.figshare.25001736.v1figshare

Additional file 2 of Evaluating spatially variable gene detection methods for spatial transcriptomics data

10.6084/m9.figshare.25001736figshare

Additional file 1 of Multiomics characterization of pyroptosis in the tumor microenvironment and therapeutic relevance in metastatic melanoma

10.6084/m9.figshare.25010344.v1figshare

Additional file 1 of Multiomics characterization of pyroptosis in the tumor microenvironment and therapeutic relevance in metastatic melanoma

10.6084/m9.figshare.25010344figshare

Additional file 1 of Multi-slice spatial transcriptome domain analysis with SpaDo

10.6084/m9.figshare.25440922.v1figshare

Additional file 1 of Multi-slice spatial transcriptome domain analysis with SpaDo

10.6084/m9.figshare.25440922figshare

Additional file 2 of Multi-slice spatial transcriptome domain analysis with SpaDo

10.6084/m9.figshare.25441029.v1figshare

Additional file 2 of Multi-slice spatial transcriptome domain analysis with SpaDo

10.6084/m9.figshare.25441029figshare

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