An immunophenotype-coupled transcriptomic atlas of human hematopoietic progenitors is a dataset published in Nature Immunology (2024). On theSindex it has a DataRank of 1.5, placing it in the top 13.8% of the data-sharing corpus. It has been cited 80 times, with 73 citing works in its 1-hop citation network. Its calibrated FAIR score is 67/100.
Ranks in the top 14% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“GSE245108”
The paper gives a GEO accession, a persistent identifier scheme.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“Gene Expression Omnibus database”
The repository is a proper noun and a curated archive that issues accessions.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“Raw sequencing FASTQ files and the processed HDF5 (h5) matrix have been deposited in the Gene Expression Omnibus database under accession code GSE245108.”
The dataset identifier appears only in the body text (Data availability section), not in the reference list.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Raw sequencing FASTQ files and the processed HDF5 (h5) matrix have been deposited in the Gene Expression Omnibus database under accession code GSE245108.”
The statement points to a repository record with an accession (Colavizza category 3).
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“we performed CITE-seq with titrations of 266 BioLegend TotalSeq-A antibodies on healthy adult bone marrow cells and generated data from over 300,000 single cells.”— not found in the paper; verdict downgraded
The dataset's content and size are described in running prose, not in an itemised inventory. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“Raw sequencing FASTQ files and the processed HDF5 (h5) matrix have been deposited in the Gene Expression Omnibus database under accession code GSE245108.”
The data are deposited in a public repository with no stated precondition.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“Raw sequencing FASTQ files and the processed HDF5 (h5) matrix have been deposited in the Gene Expression Omnibus database under accession code GSE245108.”
The paper describes the action of depositing data in GEO but does not label the access level with a standard term like 'open access'. [majority verdict 'partial' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
“These samples were consented by the donors to share the age, sex and self-identified ancestry and raw sequencing data in an open manner.”
The data are openly accessible; no gatekeeper is named or required.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No sentence states how long the data will remain available or when they become obtainable. [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
“FASTQ”— not found in the paper; verdict downgraded
Both FASTQ and HDF5 are open, community-standard file formats. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No community data or metadata standard (e.g., MIAME, MINSEQE) is named.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“GSE232559”
The paper references another dataset via its GEO accession (GSE232559).
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The CC BY 4.0 license applies to the article, not the data; no separate data license is stated.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is provided for the dataset snapshot.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“https://github.com/nsalomonis/Human-Bone-Marrow-Titration-Atlas”— not found in the paper; verdict downgraded
The code is available at a GitHub repository URL, a machine-resolvable locator. [downgraded to 'partial' — no verifiable quote from the paper]
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“RC2DK122376”
A specific grant number is provided.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“10x Chromium X 3′ version 3.1 HT kit”
The paper names specific instruments, kits, and software used to produce the data. [majority verdict 'yes' (3/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“Supplementary Table 2”
Variable definitions are provided in supplementary tables within the article, not in a separate documentation object shipped with the data. [majority verdict 'partial' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.659
From this paper's citation signal
Citation Network Contribution
0.841
From 47 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 73 citers.
U.S. Department of Health & Human Services | National Institutes of Health
Grant: RC2DK122376
U.S. Department of Health & Human Services | National Institutes of Health
Grant: R01CA284595
U.S. Department of Health & Human Services | National Institutes of Health
Grant: R01CA253981
U.S. Department of Health & Human Services | National Institutes of Health
Grant: ES007250
U.S. Department of Health & Human Services | National Institutes of Health
Grant: HL167628
U.S. Department of Health & Human Services | National Institutes of Health
Grant: R35CA242376
NHLBI NIH HHS
Grant: F31 HL167628
NIDDK NIH HHS
Grant: U54 DK126108
NIH HHS
Grant: S10 OD025045
BLRD VA
Grant: IK2 BX004952
NHLBI NIH HHS
Grant: R01 HL122661
NIDDK NIH HHS
Grant: U54 DK106857
NCI NIH HHS
Grant: P30 CA016359
NIEHS NIH HHS
Grant: T32 ES007250
National Institutes of Health
Grant: 2P30CA016359-15
COMPREHENSIVE CANCER CENTER
National Institutes of Health
Grant: 1U54DK126108-01A1
Cincinnati Cooperative Center of Excellence in Hematology
National Institutes of Health
Grant: 5R01CA253981-03
Modeling myelodysplasia
National Institutes of Health
Grant: 1S10OD025045-01
ZE5 Analytical Cytometer
National Institutes of Health
Grant: 5F31HL167628-03
Establishing the role and mechanisms of LSD1 during megakaryocytic and erythroid fate commitment
National Institutes of Health
Grant: 1R01CA284595-01
Towards an inclusive genomic risk classification for acute myeloid leukemia (AML)
National Institutes of Health
Grant: 5R35CA242376-06
Therapeutic Targeting of Human AML Stem Cells
National Institutes of Health
Grant: 5T32ES007250-33
Environmental Carcinogenesis and Mutagenesis
National Institutes of Health
Grant: 5R01HL122661-06
Mechanisms of granulocyte homeostasis
National Institutes of Health
Grant: 5RC2DK122376-05
A generalizable framework for linking single-cell genomic states with cell fate outcomes in hematopoiesis
National Institutes of Health
Grant: 5U54DK106857-04
Yale Cooperative Hematology Specialized Core Center
National Institutes of Health
Grant: 5IK2BX004952-02
Cellular Heterogeneity and Aging in MDS and AML
USVA CDA-2
FWCI
12.47
Citation Percentile
1.0%
Citation Trend
Fields of Study
MeSH Terms
Keywords