Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days is a dataset published in Scientific Data (2024). On theSindex it has a DataRank of 0.312, placing it in the top 53.9% of the data-sharing corpus. It has been cited 7 times, with 3 citing works in its 1-hop citation network. Its calibrated FAIR score is 56/100.
Ranks in the top 54% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“Datasets 1–5 can be accessed on figshare (https://doi.org/10.6084/m9.figshare.26882737)”— not found in the paper; verdict downgraded
The paper provides a DOI for the figshare repository. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“Datasets 1–5 can be accessed on figshare”
The paper names figshare as the repository for the datasets. [majority verdict 'yes' (3/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“12. Nunn, B. L. et al. Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days. Figshare. https://doi.org/10.6084/m9.figshare.26882737 (2024).”
The dataset appears as a reference-list entry.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The Illumina sequencing reads for metagenomes collected at each time point are individually accessible through the NCBI Sequence Read Archive, grouped under a single BioProject: PRJNA1093221. Datasets 1–5 can be accessed on figshare (https://doi.org/10.6084/m9.figshare.26882737)”— not found in the paper; verdict downgraded
The data availability statement points to public repositories with identifiers. [downgraded to 'partial' — no verifiable quote from the paper]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“Data Records”
The paper has a dedicated section heading that itemizes the datasets. [majority verdict 'yes' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“Datasets 1–5 can be accessed on figshare (https://doi.org/10.6084/m9.figshare.26882737)”— not found in the paper; verdict downgraded
The paper states the data are accessible on figshare with no precondition. [downgraded to 'partial' — no verifiable quote from the paper]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“Datasets 1–5 can be accessed on figshare (https://doi.org/10.6084/m9.figshare.26882737)”— not found in the paper; verdict downgraded
The paper describes the action of accessing the data on figshare without explicitly labeling the access level. [downgraded to 'no' — no verifiable quote from the paper]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are environmental and not sensitive; no gatekeeper is named in the text.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“Datasets 1–5 can be accessed on figshare (https://doi.org/10.6084/m9.figshare.26882737)”— not found in the paper; verdict downgraded
The paper states the data are available now but does not mention a retention period. [downgraded to 'no' — no verifiable quote from the paper]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
“Dataset 1 - Orcas Island, WA, USA 2021 coastal Ocean (2 m depth) Time Series - Environmental YSI EXO1 Sonde probe Data (Nunn_OrcasIsland_Data_probe.xlsx).”— not found in the paper; verdict downgraded
The paper names the .xlsx format for the datasets, which is proprietary. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (3/5 passes agreed)]
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No community standard for data is named in the paper.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
The paper does not provide an identifier for a third-party resource. [majority verdict 'no' (4/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The paper does not state a license for the data.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“Data downloaded from JGI 3.14.2024”
The paper gives a date for data download.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“All R code (version 4.4.0) used for analyses are available on the GitHub page associated with this project: https://github.com/Nunn-Lab/Publication-2021-Orcas-Island-Time-Series.”
The paper provides a GitHub repository URL for the code.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“NIH NIEHS grant R21ES034337-01”
The paper provides a grant number.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Sequencing of the flowcell was performed on the Illumina NovaSeq sequencer using NovaSeq XP V1.5 reagent kits, S4 flowcell”
The paper names specific instruments and software used.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“Data Records”
Variable definitions are provided inside the article within the 'Data Records' section, but no documentation object (e.g., README) is said to accompany the deposited data. [majority verdict 'partial' (3/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.312
From this paper's citation signal
Citation Network Contribution
0
From 0 citing papers with measurable signal
This paper's DataRank is currently driven only by its base citation score. None of the citing papers had measurable citation signal.
Learn more about DataRank methodology →U.S. Department of Health & Human Services | NIH | National Institute of Environmental Health Sciences (NIEHS)
Grant: R21ES034337-01
NSF | BIO | Division of Integrative Organismal Systems (IOS)
Grant: IOS 2041497
NIEHS NIH HHS
Grant: R21 ES034337
NSF | BIO | Division of Integrative Organismal Systems (IOS)
Grant: 2041497
Collaborative Research: RUI: Implications of bacterially driven cross-kingdom chemical interactions
NIEHS NIH HHS
Grant: F31 ES032733
National Institutes of Health
Grant: 5F31ES032733-03
Modeling Microbiome Peptides Using Metaproteomics for the Prediction of Harmful Algal Blooms
National Science Foundation
Grant: 2401646
Collaborative Research: Rhythm and Blooms: Deciphering metabolic, functional and taxonomic interactions over the life cycle of a phytoplankton bloom
National Institutes of Health
Grant: 1R03HS013039-01
Violence &SCI: Understanding the Rehabilitation Context
National Institutes of Health
Grant: 5R21ES034337-02
Using microbiomes as microsensors to forecast toxic algae blooms
National Science Foundation
Grant: 2401645
Collaborative Research: Rhythm and Blooms: Deciphering metabolic, functional and taxonomic interactions over the life cycle of a phytoplankton bloom
National Science Foundation
Grant: 2401644
Collaborative Research: Rhythm and Blooms: Deciphering metabolic, functional and taxonomic interactions over the life cycle of a phytoplankton bloom
Fields of Study
MeSH Terms
Keywords
Environmental YSI EXO1 Sonde Probe data from Orcas Island, WA, USA Coastal Ocean (2m depth) from 2021-05-27 to 2021-06-18
Flow cytometry data from samples collected from Orcas Island, WA, USA Coastal Ocean (2m depth) every four hours from 2021-05-28 to 2021-06-18
Metagenomic sample information, genetic accession identifiers (NCBI SRA, JGI IMG), and estimated gene copies from Orcas Island coastal waters (2 m depth) from 2021-05-27 to 2021-06-18
Nutrient data for samples collected every 4 hours from Orcas Island, WA, USA Coastal Ocean (2m depth) during the period from 2021-05-27 to 2021-06-18
Microbial Metagenomes across a Full Phytoplankton Bloom: High-Resolution Sampling Every 4 Hours for 22 Days
Microbial Metagenomes across a Full Phytoplankton Bloom: High-Resolution Sampling Every 4 Hours for 22 Days