Borrelia PeptideAtlas: A proteome resource of common Borrelia burgdorferi isolates for Lyme research is a dataset published in Scientific Data (2024). On theSindex it has a DataRank of 0.104, placing it in the top 77.8% of the data-sharing corpus. It has been cited 1 time, with 1 citing works in its 1-hop citation network. Its calibrated FAIR score is 46/100.
Ranks in the top 78% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“All MS data and Supplementary Tables for the Borrelia PeptideAtlas is available and deposited at the EBI PRIDE repository at https://www.ebi.ac.uk/pride/archive/projects/PXD046281 and https://doi.org/10.6019/PXD046281.”— not found in the paper; verdict downgraded
The paper gives a DOI (10.6019/PXD046281) and a PRIDE accession, both persistent identifiers, for the dataset. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“deposited to the ProteomeXchange Consortium via the PRIDE40 partner repository”
PRIDE is a named data repository listed in re3data/FAIRsharing. [majority verdict 'yes' (3/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The mass spectrometry data was deposited to the ProteomeXchange Consortium via the PRIDE40 partner repository with the dataset identifier PXD04628141.”
The dataset identifier appears only in the body text, not as a reference-list entry. [majority verdict 'partial' (4/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“All MS data and Supplementary Tables for the Borrelia PeptideAtlas is available and deposited at the EBI PRIDE repository at https://www.ebi.ac.uk/pride/archive/projects/PXD046281 and https://doi.org/10.6019/PXD046281.”— not found in the paper; verdict downgraded
The data-availability statement points to a repository record with a DOI/link, corresponding to Colavizza category 3. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“Mass spectrometry data from 35 different experiments using laboratory isolates B31 and MM1, and infective B31-5A4, with a total of 358 DDA- and 28 DIA-MS runs (Thermo Scientific instrument .raw files, Bruker instruments.d files), were uniformly analyzed through the TPP pipeline (see Methods) and deposited to the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PXD046281.”— not found in the paper; verdict downgraded
The Data Records section describes the dataset in running prose; there is no itemised inventory of files or variables. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (2/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“All MS data and Supplementary Tables for the Borrelia PeptideAtlas is available and deposited at the EBI PRIDE repository at https://www.ebi.ac.uk/pride/archive/projects/PXD046281 and https://doi.org/10.6019/PXD046281.”— not found in the paper; verdict downgraded
The data are freely and openly accessible via a public repository with no stated precondition. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
The paper labels the data as 'publicly available' in the abstract, which is a natural-language equivalent of 'open access'. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
“All MS data and Supplementary Tables for the Borrelia PeptideAtlas is available and deposited at the EBI PRIDE repository at https://www.ebi.ac.uk/pride/archive/projects/PXD046281 and https://doi.org/10.6019/PXD046281.”— not found in the paper; verdict downgraded
The data are not human-subject or sensitive, and no gatekeeper of any kind is named; the data are openly available with no access control.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“deposited to the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PXD046281”— not found in the paper; verdict downgraded
The paper states the data are deposited and available now, but does not commit to any retention period or permanent archival claim. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not name the file format of the released data; it mentions raw formats (.raw, .d, .wiff) but these are proprietary and not stated as the deposit format. [majority verdict 'no' (3/5 passes agreed)]
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
“adhering to FAIR (Findability, Accessibility, Interoperability, and Reusability) principles”
The paper does not name a specific data or metadata community standard (e.g., MIAME, ISA-Tab, an ontology); FAIR principles are not a standard.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“For isolate B31, the UniProt proteome (ProteomeID UP0000018079)”— not found in the paper; verdict downgraded
The paper provides a UniProt proteome identifier (UP0000018079) for an external reference database used in the analysis. [downgraded to 'no' — no verifiable quote from the paper]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
“Open Access This article is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License”
The only license mentioned is for the article itself, not for the data; no license artefact is attached to the dataset.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“All results collated in the Borrelia PeptideAtlas are made available at http://www.peptideatlas.org/builds/borrelia/, build 2024-03.”
The paper identifies the PeptideAtlas build with a version token 'build 2024-03'. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“Code availability The authors do not have code specific to this work to disclose.”
The paper explicitly states that no code was written for this work, so no locator is provided.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“National Institutes of Health grants from the National Institutes of Health, National Institute of Allergy and Infectious Diseases (NIAID) R21AI142302”
The paper includes specific grant numbers (e.g., R21AI142302) for the funding. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Q-Exactive HF mass spectrometer (Thermo Fisher Scientific)”
The paper names specific instruments (e.g., Q-Exactive HF) and software used to produce the data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“Supplementary Tables 1–6 are also deposited in the same PRIDE dataset.”
The paper states that supplementary tables (which likely contain definitions) are deposited alongside the data, serving as documentation objects. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.104
From this paper's citation signal
Citation Network Contribution
0
From 0 citing papers with measurable signal
This paper's DataRank is currently driven only by its base citation score. None of the citing papers had measurable citation signal.
Learn more about DataRank methodology →U.S. Department of Health & Human Services | National Institutes of Health
Grant: R21AI142302
U.S. Department of Health & Human Services | National Institutes of Health
Grant: R01GM087221
U.S. Department of Health & Human Services | National Institutes of Health
Grant: R21AI133335
U.S. Department of Health & Human Services | National Institutes of Health
Grant: R01AI029735
National Science Foundation
Grant: 1920268
NIH HHS
Grant: S10 OD026936
MeSH Terms