Homo Sapiens Chromosomal Location Ontology: A Framework for Genomic Data in Biomedical Knowledge Graphs is a dataset published in Scientific Data (2025). On theSindex it has a DataRank of 0.104, placing it in the top 77.8% of the data-sharing corpus. It has been cited 1 time. Its calibrated FAIR score is 46/100.
Ranks in the top 78% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“10.17605/OSF.IO/PE8V7”— not found in the paper; verdict downgraded
The Data availability statement provides a DOI (10.17605/OSF.IO/PE8V7), which is a persistent identifier scheme. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“the HSCLO project page at the OSF website”
The repository is named as OSF (Open Science Framework), a data repository listed in re3data. [majority verdict 'yes' (3/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“https://doi.org/10.17605/OSF.IO/PE8V7”— not found in the paper; verdict downgraded
The dataset's DOI appears only in the body text (Data availability section), not as a reference-list entry. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Knowledge-graph-ready edgelists (triple format) can be found on the HSCLO project page at the OSF website: https://osf.io/pe8v7/, https://doi.org/10.17605/OSF.IO/PE8V7.”— not found in the paper; verdict downgraded
The statement points at a repository (OSF) with a persistent identifier (DOI), so it is a repository record (Colavizza category 3). [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“f_dataset_pid”— not found in the paper; verdict downgraded
The dataset is described only by a sentence stating it is 'Knowledge-graph-ready edgelists (triple format)', with no section, table, or enumerated list of files or variables. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (2/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“Knowledge-graph-ready edgelists (triple format) can be found on the HSCLO project page at the OSF website: https://osf.io/pe8v7/, https://doi.org/10.17605/OSF.IO/PE8V7.”— not found in the paper; verdict downgraded
The text gives a route to the data on OSF with no stated precondition; the data are stated to be obtainable now. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“Knowledge-graph-ready edgelists (triple format) can be found on the HSCLO project page at the OSF website: https://osf.io/pe8v7/, https://doi.org/10.17605/OSF.IO/PE8V7.”— not found in the paper; verdict downgraded
The paper describes an access action (data can be found at a URL) but does not label the access level with a standard term like 'open access'. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are not sensitive or human-subject, and no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
The paper does not mention when the data become available or how long they persist.
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper describes the data as 'edgelists (triple format)' but does not name a specific open format like CSV, JSON, or RDF. [majority verdict 'no' (4/5 passes agreed)]
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
The paper does not name a data or metadata community standard (e.g., MIAME, MINSEQE) that its data complies with. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“4DNFIEY8UT8A”
The paper lists 4DN dataset accession numbers (e.g., 4DNFIEY8UT8A) that are identifiers for external resources used in the study. [majority verdict 'yes' (4/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No license or terms document is named for the data; only the article's license is mentioned.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“HSCLO37 and HSCLO38”
The paper explicitly names two versions of the ontology (HSCLO37 and HSCLO38), which serve as version tokens. [majority verdict 'yes' (3/5 passes agreed)]
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“The code used to generate and query HSCLO is available in a public repository: https://github.com/TaylorResearchLab/HSCLO/tree/main/HSCLO38”— not found in the paper; verdict downgraded
A machine-resolvable code-forge URL is given for the study's own code. [downgraded to 'partial' — no verifiable quote from the paper]
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“R03OD030600”
An award number (R03OD030600) is given for the funding. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“we downloaded each genomic coordinate file from the UCSC website (https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/hg19.chrom.sizes and https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/hg38.chrom.sizes). We parsed them into binned location nodes that were organized by chromosome size and scale using custom R scripts.”— not found in the paper; verdict downgraded
The text describes the production method in generic terms without naming specific instruments, kits, or software versions. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (3/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“Table 1. Node and relationship statistics for HSCLO38, detailing the hierarchical organization of chromosomal locations in the GRCh38 genome assembly.”
The data definitions (node counts, structure) are provided inside the article via tables, with no documentation object stated to accompany the data. [majority verdict 'partial' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.104
From this paper's citation signal
Citation Network Contribution
0
Citation network not refreshed for this result
This paper's DataRank is currently driven only by its base citation score. Citation network data was not refreshed for this result.
Learn more about DataRank methodology →U.S. Department of Health & Human Services | NIH | Office of Strategic Coordination
Grant: OT2OD030162
U.S. Department of Health & Human Services | NIH | Office of Strategic Coordination
Grant: 1R03DE030186
U.S. Department of Health & Human Services | NIH | Office of Strategic Coordination
Grant: OT2OD026663
U.S. Department of Health & Human Services | NIH | Office of Strategic Coordination
Grant: OT2OD026675
U.S. Department of Health & Human Services | NIH | Office of Strategic Coordination
Grant: 9U2CHD10973
U.S. Department of Health & Human Services | NIH | Office of Strategic Coordination
Grant: 3OT2OD030162-01S2
Kids First Data Resource Center (KFDRC): Harnessing Data-Driven Opportunities in the Present on behalf of the Future of Common Fund Data Ecosystem (CFDE)
NHLBI NIH HHS
Grant: U2C HL138346
NIH HHS
Grant: R03 OD030600
NICHD NIH HHS
Grant: U2C HD109731
National Institutes of Health
Grant: 3OT2OD030162-01S3
Kids First Data Resource Center (KFDRC): Harnessing Data-Driven Opportunities in the Present on behalf of the Future of Common Fund Data Ecosystem (CFDE)
National Institutes of Health
Grant: 3OT2OD026663-01S1
HuBMAP Integration, Visualization and Engagement by Modular Integration of Novel Databases (HIVE-MIND) Collaboration Component (CC)
National Institutes of Health
Grant: 1R03OD030600-01
Leveraging Common Fund data for feature selection in Kids First studies.
National Institutes of Health
Grant: 1OT2OD026675-01
Flexible Hybrid Cloud Infrastructure for Seamless Management of HuBMAP Resources
Fields of Study
MeSH Terms
Keywords