Temporal multiomics gene expression data of human embryonic stem cell-derived cardiomyocyte differentiation is a dataset published in Scientific Data (2025). On theSindex it has a DataRank of 0.208, placing it in the top 64.8% of the data-sharing corpus. It has been cited 3 times, with 1 citing works in its 1-hop citation network. Its calibrated FAIR score is 42/100.
Ranks in the top 65% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
The paper provides GEO accession numbers (GSE274620, GSE274622) and a MassIVE accession (MSV000095595), which are persistent identifiers in the PID scheme. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
The paper names NCBI GEO and MassIVE as data repositories, which are curated archives listed in re3data/FAIRsharing. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
The dataset appears as a reference-list entry (e.g., reference 15) with a persistent identifier, cited in the reference list. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
The Data Records section provides a link to archived data in public repositories with accessions, corresponding to Colavizza category 3. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“Data Records”
The paper has a dedicated 'Data Records' section that itemises the dataset's files and content (raw data, processed quantification files, labeling, format). [majority verdict 'yes' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
The data are deposited in public repositories (GEO, MassIVE) with no stated precondition such as embargo, registration, or application. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
The paper does not explicitly label the access level of the data with a standard term such as 'open access' or 'restricted access' in any sentence. [majority verdict 'no' (3/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are derived from human embryonic stem cell lines, not human subjects, and no gatekeeper is mentioned.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
The paper does not state how long the data will remain available or any retention period.
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not name any file format (e.g., CSV, FASTQ) for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
The paper does not name a data or metadata community standard applied to the data; Gene Ontology is used for analysis but not as a standard for the data itself.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“The primary antibody against cardiac troponin T (α -cTnT; Lab Vision, cat# MS-295-P1, RRID:AB_61808)”
The paper includes an RRID for the antibody, which is an identifier for a resource other than the study's own dataset. [majority verdict 'yes' (4/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The paper does not state a license for the data; the CC-BY license applies to the article only.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
The paper does not provide a version token or date to identify the snapshot of the data; the accessions are identifiers, not version tokens.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“Pre-processing scripts for RNA-seq and ribosome profiling datasets are available in the GitHub repository (https://github.com/ak3952/scientific_data_hESCtoCardiomyocyteDifferentiation).”
A machine-resolvable code-forge URL is given for the study's own code. [majority verdict 'yes' (4/5 passes agreed)]
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“M.J. was funded by the NIH (R35 GM128802, R01 AG071869, and R01 HG012216), NSF (award 2224211), and Columbia startup funding for the duration of this study.”
Award numbers (e.g., R35 GM128802) are given attached to named funders. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Paired-end sequencing was performed using an Illumina NextSeq500 desktop sequencer”
The paper names specific instruments, kits, and software used to produce the data (e.g., Illumina NextSeq500, STAR, SpectroNaut). [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
The paper does not mention a separate documentation object (e.g., README, data dictionary) shipped with the data. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.208
From this paper's citation signal
Citation Network Contribution
0
From 0 citing papers with measurable signal
This paper's DataRank is currently driven only by its base citation score. None of the citing papers had measurable citation signal.
Learn more about DataRank methodology →U.S. Department of Health & Human Services | National Institutes of Health
Grant: R35GM128802
U.S. Department of Health & Human Services | National Institutes of Health
Grant: R01AG071869
U.S. Department of Health & Human Services | National Institutes of Health
Grant: R01HG012216
U.S. Department of Health & Human Services | National Institutes of Health
Grant: F30DC019263
National Science Foundation
Grant: award 2224211
National Institutes of Health
Grant: 5R35GM128802-03
Regulation of Protein Production Dynamics: RNA Binding Proteins and the Ribosome Code
National Institutes of Health
Grant: 5R01AG071869-05
Defining the programmed proteome rejuvenation underlying gametogenesis
National Science Foundation
Grant: 2224211
EAGER: Comprehensive monitoring of protein interaction networks
National Institutes of Health
Grant: 3R01HG012216-02S1
Extensive multiplexing of protein nucleic-acid interactions to comprehensively study gene expression regulation from chromatin to mRNA degradation
National Institutes of Health
Grant: 5F30DC019263-04
The unfolded protein response as a mechanism for cellular identity in the developing olfactory system
Columbia start-up funding, Dean’s Fellow by Columbia University Graduate School of Arts and Sciences
Columbia start-up funding
Fields of Study
MeSH Terms
Keywords