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Exploring conformational landscapes and binding mechanisms of convergent evolution for the SARS-CoV-2 spike Omicron variant complexes with the ACE2 receptor using AlphaFold2-based structural ensembles and molecular dynamics simulations

Physical Chemistry Chemical Physics(2024)10.1039/d4cp01372gSource: DataRank Database

Exploring conformational landscapes and binding mechanisms of convergent evolution for the SARS-CoV-2 spike Omicron variant complexes with the ACE2 receptor using AlphaFold2-based structural ensembles and molecular dynamics simulations is a research paper published in Physical Chemistry Chemical Physics (2024). On theSindex it has a DataRank of 0. It has been cited 13 times.

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Open Access13 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

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Enrichment:Funding (4 grants)Impact (FWCI 4.19)OA: bronzeTopics (53)IDs (PubMed, OpenAlex)SDGs (2)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (6)

Mohammed Alshahrani ORCID,Grace Gupta,Sian Xiao ORCID,Peng Tao ORCID,Gennady M. Verkhivker ORCID

Live enrichment

PubMed:38869513 OpenAlex:https://openalex.org/W4399491411

National Institutes of Health

Grant: 1R01AI181600-01

Probing real-time conformational dynamics and allosteric cooperativity of the HIV-1 envelope glycoprotein during virus entry

National Institutes of Health

Grant: Subaward 6069-SC24-11

National Institutes of Health

Grant: R15GM122013

Chapman University

FWCI

4.19

Citation Percentile

0.9%

Citation Trend

2024

2025

2026

bronzeLicense: Royal Society of Chemistry Licence to Publish

journalhttps://pubs.rsc.org/en/content/articlepdf/2024/cp/d4cp01372g

publisherhttps://pubs.rsc.org/en/content/articlepdf/2024/cp/d4cp01372g

publisherhttp://pubs.rsc.org/en/content/articlepdf/2024/CP/D4CP01372G

journalhttps://doi.org/10.1039/d4cp01372g

repositoryhttps://pubmed.ncbi.nlm.nih.gov/38869513

Fields of Study

SARS-CoV-2 and COVID-19 ResearchProtein Structure and DynamicsRNA and protein synthesis mechanisms0301 basic medicine0303 health sciences03 medical and health sciencesMolecular Dynamics SimulationSpike Glycoprotein, CoronavirusAngiotensin-Converting Enzyme 2SARS-CoV-2Protein BindingHumansThermodynamicsProtein ConformationBinding SitesPeptidyl-Dipeptidase ACOVID-19SARS-CoV-2 variants

MeSH Terms

Angiotensin-Converting Enzyme 2COVID-19SARS-CoV-2Binding SitesHumansPeptidyl-Dipeptidase AProtein BindingProtein ConformationThermodynamicsMolecular Dynamics SimulationSpike Glycoprotein, Coronavirus

Keywords

Molecular dynamicsMicrosecondChemistryConformational ensemblesCharacterization (materials science)BiophysicsComputational chemistryCrystallographyBiological systemNanotechnologyPhysicsMaterials scienceBiologyBinding SitesSARS-CoV-2Protein ConformationCOVID-19Molecular Dynamics SimulationPeptidyl-Dipeptidase ASpike Glycoprotein, CoronavirusHumansThermodynamicsAngiotensin-Converting Enzyme 2Protein Binding

Sustainable Development Goals

SDG 3: 3. Good healthSDG 0: Affordable and clean energy