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FREEDA: An automated computational pipeline guides experimental testing of protein innovation

The Journal of Cell Biology(2023)10.1083/jcb.202212084Source: DataRank Database

FREEDA: An automated computational pipeline guides experimental testing of protein innovation is a research paper published in The Journal of Cell Biology (2023). On theSindex it has a DataRank of 0. It has been cited 8 times.

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Open Access8 citations

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uniprot doi pdb

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (4 grants)Impact (FWCI 0.74)OA: bronzeTopics (64)Linked Datasets (16)DataCite Reuse (16)IDs (PubMed, PMC, OpenAlex)Annotations (3)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (1/2)

Open Access

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (0/3)

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Authors (3)

R. Brian Akins ORCID,Michael A. Lampson ORCID,Damian Dudka ORCID

Live enrichment

PubMed:37358475 PMC:PMC10292211 OpenAlex:https://openalex.org/W4382011068

Swiss National Science Foundation

Grant: P2GEP3_187772

National Institutes of Health

Grant: R35GM122475

Swiss National Science Foundation

Grant: 187772

What are the mechanisms suppressing selfish chromosome segregation in mammalian female meiosis?

National Institutes of Health

Grant: 5R35GM122475-03

Cell biological mechanisms of centromere drive

FWCI

0.74

Citation Percentile

0.7%

Citation Trend

2023

2024

2025

2026

bronzeLicense: CC BY NC SA

journalhttps://rupress.org/jcb/article-pdf/222/9/e202212084/1453807/jcb_202212084.pdf

publisherhttps://rupress.org/jcb/article-pdf/222/9/e202212084/1453807/jcb_202212084.pdf

publisherhttps://rupress.org/jcb/article-pdf/doi/10.1083/jcb.202212084/1453807/jcb_202212084.pdf

journalhttps://doi.org/10.1083/jcb.202212084

repositoryhttps://pubmed.ncbi.nlm.nih.gov/37358475

Fields of Study

Genomics and Phylogenetic StudiesChromosomal and Genetic VariationsRNA and protein synthesis mechanisms0206 medical engineering02 engineering and technologyAnimalsMiceRatsBirdsCell BiologyCentromereChromosomal Proteins, Non-HistoneComputational BiologyDrosophilaEvolution, MolecularPrimatesProtein DomainsProteinsComputer Simulation

MeSH Terms

Protein DomainsAnimalsBirdsCentromereChromosomal Proteins, Non-HistoneComputer SimulationCell BiologyDrosophilaPrimatesProteinsEvolution, MolecularComputational BiologyMiceRats

Keywords

BiologyPipeline (software)CentromereSelection (genetic algorithm)LimitingComputational biologyFunction (biology)Focus (optics)Interface (matter)Graphical user interfaceProtein functionComputer scienceBioinformaticsEvolutionary biologyGeneGeneticsArtificial intelligenceChromosomePrimatesChromosomal Proteins, Non-HistoneProteinsCell BiologyRatsToolsBirdsEvolution, MolecularMiceProtein DomainsAnimalsDrosophilaComputer Simulation

Sustainable Development Goals

SDG 0: Industry, innovation and infrastructure

FREEDA genome assemblies (NCBI GenBank) - Drosophila - Reference genome

10.5281/zenodo.18354538Zenodo

FREEDA genome assemblies (NCBI GenBank) - Drosophila - Reference genome

10.5281/zenodo.18354539Zenodo

FREEDA genome assemblies (NCBI GenBank) - Drosophila

10.5281/zenodo.18354986Zenodo

FREEDA genome assemblies (NCBI GenBank) - Drosophila

10.5281/zenodo.18354987Zenodo

FREEDA genome assemblies (NCBI GenBank) - Rodents - Set B

10.5281/zenodo.18244866Zenodo