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Single-cell omics arena: evaluation of large language models for automatic cell-type annotations on single-cell omics data via RNA-seq bridging

Briefings in Bioinformatics(2025)10.1093/bib/bbaf622Source: DataRank Database

Single-cell omics arena: evaluation of large language models for automatic cell-type annotations on single-cell omics data via RNA-seq bridging is a research paper published in Briefings in Bioinformatics (2025). On theSindex it has a DataRank of 0. It has been cited 1 time.

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Open Access1 citations

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datarank_citation_only_1hop_v6· scope data_onlyMethodology

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Enrichment:Funding (2 grants)Impact (FWCI 0.43)OA: goldTopics (22)IDs (PubMed, PMC, OpenAlex)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (4)

Siwei Xu ORCID,Yongxian Wu ORCID,Jing Zhang ORCID,Junhao Liu ORCID

Live enrichment

PubMed:41283813 PMC:PMC12641614 OpenAlex:https://openalex.org/W4416738253

National Institutes of Health

Grant: R01HG012572

National Institutes of Health

Grant: R01DA063316

FWCI

0.43

Citation Percentile

0.7%

Citation Trend

2026

goldLicense: cc-by-nc

journalhttps://academic.oup.com/bib/article-pdf/26/6/bbaf622/65490434/bbaf622.pdf

publisherhttps://academic.oup.com/bib/article-pdf/26/6/bbaf622/65490434/bbaf622.pdf

journalhttps://doi.org/10.1093/bib/bbaf622

repositoryhttps://pubmed.ncbi.nlm.nih.gov/41283813

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/12641614

Fields of Study

Single-cell and spatial transcriptomicsCell Image Analysis TechniquesDomain Adaptation and Few-Shot Learning

MeSH Terms

RNA-SeqLarge Language ModelsHumansSequence Analysis, RNAComputational BiologyMolecular Sequence AnnotationSingle-Cell Analysis

Keywords

AnnotationBridging (networking)Leverage (statistics)GenomicsPipeline (software)Process (computing)Profiling (computer programming)Identification (biology)Biological databaseCell-type AnnotationLarge Language ModelNatural Language Processing For Bioinformatics