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Founder reconstruction enables scalable and seamless pangenomic analysis

Bioinformatics(2021)10.1093/bioinformatics/btab516Source: DataRank Database

Founder reconstruction enables scalable and seamless pangenomic analysis is a research paper published in Bioinformatics (2021). On theSindex it has a DataRank of 0.425. It has been cited 16 times.

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0.425DataRank · unranked

Scored on demand from live citation data

16 citations

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datarank_citation_only_1hop_v6· scope data_onlyMethodology

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Enrichment:Funding (2 grants)OA: hybridTopics (23)Linked Datasets (15)DataCite Reuse (15)IDs (PubMed, PMC)Annotations (1)

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Context only (not used in score)

Findable (2/2)

Has DOI
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Accessible (0/2)

Interoperable (2/2)

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Reusable (0/3)

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DataRank Breakdown

Base Score 100%Citation Network 0%

Base Score Contribution

0.425

From this paper's citation signal

Citation Network Contribution

Citation network not refreshed for this result

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Authors (5)

Bastien Cazaux,Saska Dönges,Daniel Valenzuela,Veli Mäkinen ORCID,Tuukka Norri ORCID

Live enrichment

PubMed:34260702 PMC:PMC8665761

Academy of Finland

Grant: 309048

Sequence analysis revisited and extended

Helsinki Institute for Information Technology

hybridLicense: cc-by

HYBRIDhttps://academic.oup.com/bioinformatics/article-pdf/37/24/4611/41726965/btab516.pdf

publisherhttps://academic.oup.com/bioinformatics/article-pdf/37/24/4611/41726965/btab516.pdf

publisherhttp://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btab516/40391795/btab516.pdf

publisherhttps://academic.oup.com/bioinformatics/article-pdf/37/24/4611/50334896/btab516.pdf

repositoryhttp://hdl.handle.net/10138/338304

Fields of Study

MedicineComputer ScienceBiology0301 basic medicine0206 medical engineering02 engineering and technology03 medical and health sciences

MeSH Terms

Sequence Analysis, DNAGenomicsGenomeSoftwareWorkflow

Keywords

Computer and information sciencesGenomeGENOMESGenomicsSequence Analysis, DNAOriginal PapersREAD ALIGNMENTGRAPHSWorkflowSETSoftware

Additional file 1 of Matchtigs: minimum plain text representation of k-mer sets

10.6084/m9.figshare.26596085.v1figshare

Additional file 1 of Matchtigs: minimum plain text representation of k-mer sets

10.6084/m9.figshare.26596085figshare

Additional file 6 of Matchtigs: minimum plain text representation of k-mer sets

10.6084/m9.figshare.26596100.v1figshare

Additional file 6 of Matchtigs: minimum plain text representation of k-mer sets

10.6084/m9.figshare.26596100figshare

Additional file 1 of Constructing founder sets under allelic and non-allelic homologous recombination

10.6084/m9.figshare.26621083.v1figshare

Additional file 1 of Constructing founder sets under allelic and non-allelic homologous recombination

10.6084/m9.figshare.26621083figshare

Indexable Elastic Founder Graphs of Minimum Height

10.4230/lipics.cpm.2022.19Schloss Dagstuhl – Leibniz-Zentrum für Informatik

Additional file 5 of Matchtigs: minimum plain text representation of k-mer sets

10.6084/m9.figshare.26596097.v1figshare

Additional file 2 of Matchtigs: minimum plain text representation of k-mer sets

10.6084/m9.figshare.26596088figshare

Additional file 5 of Matchtigs: minimum plain text representation of k-mer sets

10.6084/m9.figshare.26596097figshare

Additional file 4 of Matchtigs: minimum plain text representation of k-mer sets

10.6084/m9.figshare.26596094.v1figshare

Additional file 2 of Matchtigs: minimum plain text representation of k-mer sets

10.6084/m9.figshare.26596088.v1figshare

Additional file 4 of Matchtigs: minimum plain text representation of k-mer sets

10.6084/m9.figshare.26596094figshare

Additional file 3 of Matchtigs: minimum plain text representation of k-mer sets

10.6084/m9.figshare.26596091.v1figshare

Additional file 3 of Matchtigs: minimum plain text representation of k-mer sets

10.6084/m9.figshare.26596091figshare

Founder reconstruction enables scalable and seamless pangenomic analysis

FAIR Checklist

DataRank Breakdown

Authors (5)

Funding (2 grants)

Open Access

Topics

Linked Datasets (15)

Annotations (Europe PMC)