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PacRAT: a program to improve barcode-variant mapping from PacBio long reads using multiple sequence alignment

Bioinformatics(2022)10.1093/bioinformatics/btac165Source: DataRank Database

PacRAT: a program to improve barcode-variant mapping from PacBio long reads using multiple sequence alignment is a research paper published in Bioinformatics (2022). On theSindex it has a DataRank of 0. It has been cited 11 times.

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Open Access11 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

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Enrichment:Funding (11 grants)OA: greenTopics (19)IDs (PubMed, PMC)

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Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (4)

Clara J. Amorosi ORCID,Soyeon Showman ORCID,Maitreya J. Dunham ORCID,Chiann-Ling C Yeh ORCID

Live enrichment

PubMed:35561209 PMC:PMC9306489

National Institute of General Medical Sciences of the National Institutes of Health

Grant: R01 GM132162

National Institute of General Medical Sciences of the National Institutes of Health

Grant: R01 GM101091

National Human Genome Research Institute of the NIH

Grant: T32 HG00035

National Science Foundation Graduate Research Fellowships Program

Grant: DGE-1762114

National Institutes of Health

Grant: 5T32HG000035-04

INTERDISCIPLINARY TRAINING IN GENOMIC SCIENCE

National Science Foundation

Grant: 1762114

Graduate Research Fellowship Program (GRFP)

National Institutes of Health

Grant: 5R01GM101091-06

Genetic basis of stress tolerance in natural populations of yeast

National Institutes of Health

Grant: 5R01GM132162-03

Comprehensive, context-aware, functional analysis of Cytochrome P450 variants

Faculty Scholar grant from the Howard Hughes Medical Institute

Bonita and David Brewer Fellowship

NIH

Influential Citations

greenLicense: OUP Standard Publication Reuse

GREENhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9306489

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/9306489

publisherhttps://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btac165/43293464/btac165.pdf

publisherhttps://academic.oup.com/bioinformatics/article-pdf/38/10/2927/49009874/btac165.pdf

https://doi.org/10.1093/bioinformatics/btac165

Fields of Study

Biology0301 basic medicine0303 health sciences03 medical and health sciencesAlgorithmsHigh-Throughput Nucleotide SequencingSequence AlignmentSequence Analysis, DNASoftware

MeSH Terms

Sequence AlignmentSequence Analysis, DNAAlgorithmsSoftwareHigh-Throughput Nucleotide Sequencing

Keywords

High-Throughput Nucleotide SequencingSequence Analysis, DNASequence AlignmentAlgorithmsSoftware

PacRAT: a program to improve barcode-variant mapping from PacBio long reads using multiple sequence alignment

FAIR Checklist

Authors (4)

Funding (11 grants)

Impact

Open Access

Topics