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LPTD: a novel linear programming-based topology determination method for cryo-EM maps

Bioinformatics(2022)10.1093/bioinformatics/btac170Source: DataRank Database

LPTD: a novel linear programming-based topology determination method for cryo-EM maps is a research paper published in Bioinformatics (2022). On theSindex it has a DataRank of 0. It has been cited 1 time.

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Open Access1 citations

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Enrichment:Funding (3 grants)Impact (FWCI 0.08)OA: greenTopics (28)IDs (PubMed, PMC, OpenAlex)Annotations (1)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (5)

Mahmoud Naghibzadeh,Andrea Pagnani ORCID,Mohammad Reza Saberi ORCID,Kamal Al Nasr ORCID,Bahareh Behkamal ORCID

Live enrichment

PubMed:35561171 PMC:PMC9306757 OpenAlex:https://openalex.org/W4220712992

NIGMS NIH HHS

Grant: R15 GM126509

National Institutes of Health

Grant: 1R15GM126509-01

A Computational Tool for Modeling of Protein Macromolecules Guided by Cryo-Electron Microscopy Data

NIH

FWCI

0.08

Citation Percentile

0.4%

Citation Trend

2025

greenLicense: OUP Standard Publication Reuse

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/9306757

publisherhttps://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btac170/43248825/btac170.pdf

publisherhttps://academic.oup.com/bioinformatics/article-pdf/38/10/2734/49009566/btac170.pdf

journalhttps://doi.org/10.1093/bioinformatics/btac170

Fields of Study

Machine Learning in BioinformaticsProtein Structure and DynamicsAdvanced Electron Microscopy Techniques and Applications0301 basic medicine03 medical and health sciences0206 medical engineering02 engineering and technology

MeSH Terms

Models, MolecularProgramming, LinearProtein ConformationProteinsProtein Structure, SecondaryCryoelectron Microscopy

Keywords

Topology (electrical circuits)Computer scienceMatching (statistics)Bipartite graphNetwork topologyAlgorithmGraphTheoretical computer scienceMathematicsModels, MolecularProtein ConformationCryoelectron MicroscopyProteinsProgramming, LinearProtein Structure, Secondary

Sustainable Development Goals

SDG 0: Peace, Justice and strong institutions

LPTD: a novel linear programming-based topology determination method for cryo-EM maps

FAIR Checklist

Authors (5)

Funding (3 grants)

Impact

Open Access

Topics

Annotations (Europe PMC)