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SNIKT: sequence-independent adapter identification and removal in long-read shotgun sequencing data

Bioinformatics(2022)10.1093/bioinformatics/btac389Source: DataRank Database

SNIKT: sequence-independent adapter identification and removal in long-read shotgun sequencing data is a research paper published in Bioinformatics (2022). On theSindex it has a DataRank of 0. It has been cited 7 times.

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Scored on demand from live citation data

Open Access7 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

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Enrichment:Funding (5 grants)Impact (FWCI 0.42)OA: greenTopics (34)IDs (PubMed, PMC, OpenAlex)Annotations (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (4)

Christopher A. Brown ORCID,John R. Erb‐Downward ORCID,Robert P. Dickson ORCID,Piyush Ranjan ORCID

Live enrichment

PubMed:35695743 PMC:PMC9991892 OpenAlex:https://openalex.org/W4282823156

National Institutes for Health

Grant: R01HL144599

National Institutes for Health

Grant: T32HL007749

National Institutes of Health

Grant: 1T32HL007749-01

PULMONARY CELLULAR AND MOLECULAR BIOLOGY TRAINING

National Institutes of Health

Grant: 5R01HL144599-04

The role of the lung microbiome in oxygen-induced lung injury

Kahn Foundation

FWCI

0.42

Citation Percentile

0.6%

Citation Trend

2022

2023

2024

2026

greenLicense: OUP Standard Publication Reuse

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/9991892

publisherhttps://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btac389/44152735/btac389.pdf

publisherhttps://academic.oup.com/bioinformatics/article-pdf/38/15/3830/49884077/btac389.pdf

journalhttps://doi.org/10.1093/bioinformatics/btac389

Fields of Study

Genomics and Phylogenetic StudiesMolecular Biology Techniques and ApplicationsEnvironmental DNA in Biodiversity Studies0301 basic medicine03 medical and health sciences0206 medical engineering02 engineering and technology

MeSH Terms

SoftwareSequence Analysis, DNAMetagenomeMetagenomics

Keywords

Adapter (computing)ShotgunShotgun sequencingComputer scienceDocumentationMIT LicenseMetagenomicsUnixComputational biologySource codeSequence assemblyDNA sequencingLicenseProgramming languageDatabaseOperating systemSoftwareBiologyDNAGeneticsGeneMetagenomeSequence Analysis, DNA

SNIKT: sequence-independent adapter identification and removal in long-read shotgun sequencing data

FAIR Checklist

Authors (4)

Funding (5 grants)

Impact

Open Access

Topics

Annotations (Europe PMC)