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LanceOtron: a deep learning peak caller for genome sequencing experiments

Bioinformatics(2022)10.1093/bioinformatics/btac525Source: DataRank Database

LanceOtron: a deep learning peak caller for genome sequencing experiments is a research paper published in Bioinformatics (2022). On theSindex it has a DataRank of 0.587. It has been cited 49 times.

N/A

0.587DataRank · unranked

Scored on demand from live citation data

Open Access49 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (28 grants)Impact (FWCI 3.53)OA: hybridTopics (41)IDs (PubMed, PMC, OpenAlex)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 100%Citation Network 0%

Base Score Contribution

0.587

From this paper's citation signal

Citation Network Contribution

Citation network not refreshed for this result

This paper's DataRank is currently driven only by its base citation score. Citation network data was not refreshed for this result.

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Authors (6)

Martin J. Sergeant ORCID,C. B. Cole ORCID,Damien J. Downes ORCID,Jim R. Hughes ORCID,Stephen Taylor ORCID

Live enrichment

PubMed:35866989 PMC:PMC9477537 OpenAlex:https://openalex.org/W4286561994

National Institutes of Health

Grant: R24DK106766

Medical Research Council

Grant: MC_UU_12025

Medical Research Council

Grant: MC_UU_00016/14

Gene regulation by distal regulatory elements in Erythropoiesis and the effect of natural sequence variants.

Wellcome Trust

Grant: 106130/Z/14/Z

Medical Research Council

Grant: MC_UU_00016/4

Medical Research Council

Grant: G1000801

Medical Research Council

Grant: MC_UU_12009/4

Medical Research Council

Grant: G0902418

Medical Research Council

Grant: MC_U137961145

Medical Research Council

Grant: MR/M00919X/1

Medical Research Council

Grant: MR/T014067/1

Medical Research Council

Grant: G1000801j

Academy of Medical Sciences

Grant: GCRFNG\100164

Medical Research Council

Grant: MC_UU_00029/3

Medical Research Council

Grant: MC_EX_MR/R023301/1

Medical Research Council

Grant: MC_U137961147

Medical Research Council

Grant: G1000801b

Medical Research Council

Grant: G1000801e

Medical Research Council

Grant: MC_PC_14131

Medical Research Council

Grant: MC_PC_15069

Medical Research Council

Grant: MC_U137961144

Medical Research Council

Grant: MC_UU_00016/12

Medical Research Council

Grant: MC_UU_00021/1

Medical Research Council

Grant: 1377798

Medical Research Council

Grant: MC_UU_12009/13

Medical Research Council

Grant: MR/K01577X/1

Wellcome Trust

Grant: 106130

A systematic approach to understanding the biology underpinning GWAS hits.

National Institutes of Health

Grant: 5R24DK106766-02

VISION: ValIdated Systematic IntegratiON of epigenomic data

FWCI

3.53

Citation Percentile

0.9%

Citation Trend

2022

2023

2024

2025

2026

hybridLicense: cc-by

journalhttps://academic.oup.com/bioinformatics/article-pdf/38/18/4255/45878367/btac525.pdf

publisherhttps://academic.oup.com/bioinformatics/article-pdf/38/18/4255/45878367/btac525.pdf

publisherhttps://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btac525/45494376/btac525.pdf

publisherhttps://academic.oup.com/bioinformatics/article-pdf/38/18/4255/52710834/btac525.pdf

journalhttps://doi.org/10.1093/bioinformatics/btac525

Fields of Study

Genomics and Phylogenetic StudiesGenomics and Chromatin DynamicsFractal and DNA sequence analysis0301 basic medicine0303 health sciences03 medical and health sciencesHumansDeep LearningSequence Analysis, DNASoftwareChromatin Immunoprecipitation SequencingBase SequenceHigh-Throughput Nucleotide Sequencing

MeSH Terms

Deep LearningChromatin Immunoprecipitation SequencingBase SequenceHumansSoftwareSequence Analysis, DNAHigh-Throughput Nucleotide Sequencing

Keywords

Python (programming language)BenchmarkingComputer scienceSource codeDeep learningGenomeArtificial intelligenceMachine learningData miningPattern recognition (psychology)BiologyGeneticsProgramming languageGeneBase SequenceHumansChromatin Immunoprecipitation SequencingHigh-Throughput Nucleotide SequencingSequence Analysis, DNAOriginal PapersSoftware