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TVAR: assessing tissue-specific functional effects of non-coding variants with deep learning

Bioinformatics(2022)10.1093/bioinformatics/btac608Source: DataRank Database

TVAR: assessing tissue-specific functional effects of non-coding variants with deep learning is a research paper published in Bioinformatics (2022). On theSindex it has a DataRank of 0.412. It has been cited 7 times, with 12 citing works in its 1-hop citation network.

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0.412DataRank · unranked

Scored on demand from live citation data

Open Access7 citations · 12 citing works in its network

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (3 grants)Impact (FWCI 3.53)OA: bronzeTopics (42)Linked Datasets (16)DataCite Reuse (16)IDs (PubMed, PMC, OpenAlex)SDGs (2)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (1/2)

Open Access

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (0/3)

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DataRank Breakdown

Base Score 76%Citation Network 24%

Base Score Contribution

0.312

From this paper's citation signal

Citation Network Contribution

0.100

From 4 citing papers with measurable signal

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Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 12 citers.

CVD-associated SNPs with regulatory potential reveal novel non-coding disease genes
Human Genomics202322 citations58 referencesContributes 0.054
Genetic biomarkers and machine learning techniques for predicting diabetes: systematic review
Artificial Intelligence Review202413 citations95 referencesContributes 0.028
Translating pharmacogenomic sequencing data into drug response predictions—How to interpret variants of unknown significance
British Journal of Clinical Pharmacology202315 citations126 referencesContributes 0.022
CVD-associated SNPs with regulatory potential drive pathologic non-coding RNA expression
Research Square20231 citations50 referencesContributes 0.014
CVD-associated SNPs with regulatory potential drive pathologic non-coding RNA expression
bioRxiv (Cold Spring Harbor Laboratory)20230 citations50 referencesContributes 0.000

Authors (7)

Rui Chen ORCID,Quan Wang ORCID,Qiang Wei ORCID,Ying Ji ORCID,Xue Zhong ORCID

Live enrichment

PubMed:36063453 PMC:PMC9563698 OpenAlex:https://openalex.org/W4294631170

National Institutes of Health

Grant: U01HG009086

National Institutes of Health

Grant: 5U01HG009086-03

Analysis, Validation and Resource Creation for Genome Sequencing of Complex Diseases

Vanderbilt University

FWCI

3.53

Citation Percentile

0.9%

Citation Trend

2023

2024

bronzeLicense: OUP Standard Publication Reuse

journalhttps://academic.oup.com/bioinformatics/article-pdf/38/20/4697/46535092/btac608.pdf

publisherhttps://academic.oup.com/bioinformatics/article-pdf/38/20/4697/46535092/btac608.pdf

publisherhttps://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btac608/45812760/btac608.pdf

journalhttps://doi.org/10.1093/bioinformatics/btac608

repositoryhttps://pubmed.ncbi.nlm.nih.gov/36063453

Fields of Study

Genomics and Rare DiseasesGenetic Associations and EpidemiologyBioinformatics and Genomic Networks0301 basic medicine03 medical and health sciencesDeep LearningDiabetes Mellitus, Type 2Genome-Wide Association StudyHumansPolymorphism, Single NucleotideQuantitative Trait LociSoftware

MeSH Terms

Deep LearningDiabetes Mellitus, Type 2HumansSoftwarePolymorphism, Single NucleotideQuantitative Trait LociGenome-Wide Association Study

Keywords

EpigenomicsGenome-wide association studyExpression quantitative trait lociComputational biologyBiologyHuman genomeGeneticsGenomeDNA methylationGeneSingle-nucleotide polymorphismQuantitative Trait Loci610Single NucleotidePolymorphism, Single Nucleotide576Deep LearningDiabetes Mellitus, Type 2Diabetes MellitusHumansPolymorphismType 2Software

Sustainable Development Goals

SDG 3: 3. Good healthSDG 0: Good health and well-being

Additional file 1 of CVD-associated SNPs with regulatory potential reveal novel non-coding disease genes

10.6084/m9.figshare.23751782.v1figshare

Additional file 1 of CVD-associated SNPs with regulatory potential reveal novel non-coding disease genes

10.6084/m9.figshare.23751782figshare

Additional file 8 of CVD-associated SNPs with regulatory potential reveal novel non-coding disease genes

10.6084/m9.figshare.23751803figshare

Additional file 7 of CVD-associated SNPs with regulatory potential reveal novel non-coding disease genes

10.6084/m9.figshare.23751800figshare

Additional file 2 of CVD-associated SNPs with regulatory potential reveal novel non-coding disease genes

10.6084/m9.figshare.23751785.v1figshare

Additional file 5 of CVD-associated SNPs with regulatory potential reveal novel non-coding disease genes

10.6084/m9.figshare.23751794figshare

Additional file 7 of CVD-associated SNPs with regulatory potential reveal novel non-coding disease genes

10.6084/m9.figshare.23751800.v1figshare

Additional file 6 of CVD-associated SNPs with regulatory potential reveal novel non-coding disease genes

10.6084/m9.figshare.23751797.v1figshare

Additional file 3 of CVD-associated SNPs with regulatory potential reveal novel non-coding disease genes

10.6084/m9.figshare.23751788figshare

Additional file 3 of CVD-associated SNPs with regulatory potential reveal novel non-coding disease genes

10.6084/m9.figshare.23751788.v1figshare

Additional file 5 of CVD-associated SNPs with regulatory potential reveal novel non-coding disease genes

10.6084/m9.figshare.23751794.v1figshare

Additional file 6 of CVD-associated SNPs with regulatory potential reveal novel non-coding disease genes

10.6084/m9.figshare.23751797figshare

Additional file 2 of CVD-associated SNPs with regulatory potential reveal novel non-coding disease genes

10.6084/m9.figshare.23751785figshare

Additional file 4 of CVD-associated SNPs with regulatory potential reveal novel non-coding disease genes

10.6084/m9.figshare.23751791figshare

Additional file 4 of CVD-associated SNPs with regulatory potential reveal novel non-coding disease genes

10.6084/m9.figshare.23751791.v1figshare

Additional file 8 of CVD-associated SNPs with regulatory potential reveal novel non-coding disease genes

10.6084/m9.figshare.23751803.v1figshare