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Gene set proximity analysis: expanding gene set enrichment analysis through learned geometric embeddings, with drug-repurposing applications in COVID-19

Bioinformatics(2022)10.1093/bioinformatics/btac735Source: DataRank Database

Gene set proximity analysis: expanding gene set enrichment analysis through learned geometric embeddings, with drug-repurposing applications in COVID-19 is a research paper published in Bioinformatics (2022). On theSindex it has a DataRank of 0. It has been cited 9 times.

N/A

0DataRank · unranked

Scored on demand from live citation data

Open Access9 citations

Cite:

Linked data & code

Gene set proximity analysis: expanding gene set enrichment analysis through learned geometric embeddings · arXiv

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (4 grants)OA: hybridTopics (9)Linked Datasets (1)DataCite Reuse (1)IDs (PubMed)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (1/2)

Open Access

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (0/3)

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Authors (7)

Taryn O. Hall ORCID,Yinglong Guo ORCID,Luke Tso,Kathy Tzeng,Le Cong ORCID

Live enrichment

PubMed:23304386

National Institutes of Health

Grant: GM007365

National Institutes of Health

Grant: GM102365

National Institutes of Health

Grant: 5T32GM007365-23

MEDICAL SCIENTIST TRAINING PROGRAM

National Institutes of Health

Grant: 1R01GM102365-01

Combining systems biology and structural biology to find new therapeutics

hybridLicense: cc-by

publisherhttps://academic.oup.com/bioinformatics/article-pdf/39/1/btac735/48448718/btac735.pdf

publisherhttps://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btac735/47464891/btac735.pdf

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/9805577

https://doi.org/10.1093/bioinformatics/btac735

https://pubmed.ncbi.nlm.nih.gov/36394254

Fields of Study

0301 basic medicine03 medical and health sciences

Keywords

Original PaperSARS-CoV-2Drug RepositioningHumansCOVID-19Reproducibility of ResultsRetrospective Studies

Sustainable Development Goals

SDG 3: 3. Good health

Gene set proximity analysis: expanding gene set enrichment analysis through learned geometric embeddings

10.48550/arxiv.2202.00143arXiv