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MedCPT: Contrastive Pre-trained Transformers with large-scale PubMed search logs for zero-shot biomedical information retrieval

Bioinformatics(2023)10.1093/bioinformatics/btad651Source: DataRank Database

MedCPT: Contrastive Pre-trained Transformers with large-scale PubMed search logs for zero-shot biomedical information retrieval is a research paper published in Bioinformatics (2023). On theSindex it has a DataRank of 5.8. It has been cited 144 times, with 125 citing works in its 1-hop citation network.

N/A

5.8DataRank · unranked

Scored on demand from live citation data

Open Access144 citations · 125 citing works in its network

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (2 grants)Impact (FWCI 4.43)OA: goldTopics (25)IDs (PubMed, PMC, OpenAlex)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 13%Citation Network 87%

Base Score Contribution

0.747

From this paper's citation signal

Citation Network Contribution

5.1

From 65 citing papers with measurable signal

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Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 125 citers.

Improving medical reasoning through retrieval and self-reflection with retrieval-augmented large language models
Bioinformatics2024115 citations2 referencesContributes 2.377
GPT-4 performance on querying scientific publications: reproducibility, accuracy, and impact of an instruction sheet
BMC Medical Research Methodology202425 citations20 referencesContributes 0.163
BioLORD-2023: semantic textual representations fusing large language models and clinical knowledge graph insights
Journal of the American Medical Informatics Association202457 citations27 referencesContributes 0.150
Benchmarking retrieval-augmented large language models in biomedical NLP: Application, robustness, and self-awareness
Science Advances202512 citations18 referencesContributes 0.142
MedCoT-RAG: Causal Chain-of-Thought RAG for Medical Question Answering
20253 citations10 referencesContributes 0.139

Authors (7)

Won Bae Kim ORCID,Qingyu Chen ORCID,Donald C. Comeau ORCID,Lana Yeganova ORCID,W. John Wilbur

Live enrichment

PubMed:37930897 PMC:PMC10627406 OpenAlex:https://openalex.org/W4388409299

NIH Intramural Research Program, National Library of Medicine

FWCI

4.43

Citation Percentile

1.0%

Citation Trend

2023

2024

2025

2026

goldLicense: cc-by

journalhttps://academic.oup.com/bioinformatics/article-pdf/39/11/btad651/52799559/btad651.pdf

publisherhttps://academic.oup.com/bioinformatics/article-pdf/39/11/btad651/52799559/btad651.pdf

journalhttps://doi.org/10.1093/bioinformatics/btad651

repositoryhttps://pubmed.ncbi.nlm.nih.gov/37930897

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/10627406

Fields of Study

Artificial Intelligence in Healthcare and EducationBiomedical Text Mining and OntologiesTopic ModelingInformation Storage and RetrievalLanguageNatural Language ProcessingPubMedSemanticsReview Literature as Topic

MeSH Terms

LanguageNatural Language ProcessingReview Literature as TopicSemanticsInformation Storage and RetrievalPubMed

Keywords

Computer scienceBiomedicineTransformerInformation retrievalSentenceNatural language processingArtificial intelligenceEncoderMatching (statistics)Bioinformatics

Sustainable Development Goals

SDG 0: Peace, Justice and strong institutions