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DNABERT-S: pioneering species differentiation with species-aware DNA embeddings

Bioinformatics(2025)10.1093/bioinformatics/btaf188Source: DataRank Database

DNABERT-S: pioneering species differentiation with species-aware DNA embeddings is a research paper published in Bioinformatics (2025). On theSindex it has a DataRank of 0. It has been cited 28 times.

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0DataRank · unranked

Scored on demand from live citation data

Open Access28 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (15 grants)OA: goldTopics (51)IDs (PubMed, PMC)

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Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (8)

Weimin Wu ORCID,Harrison Ho ORCID,Jiayi Wang ORCID,Lizhen Shi ORCID,Ramana V. Davuluri ORCID

Live enrichment

PubMed:40662791 PMC:PMC12261423

NIH

Grant: R01LM1372201

NSF

Grant: CAREER1841569

NSF

Grant: DOE DE-AC02-07CH11359

NSF

Grant: DOE LAB 20-2261

NSF

Grant: TRIPODS1740735

Department of Energy

Grant: DE-AC02-05CH11231

NLM NIH HHS

Grant: R01 LM013722

National Science Foundation

Grant: 1841569

CAREER: An Integrated Inferential Framework for Big Data Research and Education

National Science Foundation

Grant: 1740735

Collaborative Research: TRIPODS Institute for Optimization and Learning

Department of Energy Joint Genome Institute

Office of Science

DOE Office of Science User Facility

Office of Science

Department of Energy Joint Genome Institute

goldLicense: cc-by

publisherhttps://academic.oup.com/bioinformatics/article-pdf/41/Supplement_1/i255/63745376/btaf188.pdf

repositoryhttps://escholarship.org/uc/item/9kf0s9g0

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/12261423

Europe_PMChttps://europepmc.org/articles/PMC12261423

Europe_PMChttps://europepmc.org/articles/PMC12261423?pdf=render

Fields of Study

0206 medical engineering02 engineering and technologySequence Analysis, DNADNAGenomicsAlgorithmsSpecies SpecificityGenome

MeSH Terms

DNASequence Analysis, DNAGenomicsSpecies SpecificityGenomeAlgorithms

Keywords

FOS: Computer and information sciencesComputer Science - Artificial Intelligence3102 Bioinformatics and Computational Biology (for-2020)08 Information and Computing Sciences (for)3105 Genetics (for-2020)Genome (mesh)46 Information and Computing Sciences (for-2020)Computational Engineering, Finance, and Science (cs.CE)Genome Sequence AnalysisSpecies Specificity4611 Machine Learning (for-2020)31 Biological sciences (for-2020)Quantitative Biology - GenomicsSpecies Specificity (mesh)Algorithms (mesh)Computer Science - Computational Engineering, Finance, and ScienceGenomics (q-bio.GN)3 Good Health and Well Being (sdg)Computer Science - Computation and LanguageGenomeGenetics (rcdc)Generic health relevance (hrcs-hc)Sequence Analysis, DNADNAGenomicsHuman Genome (rcdc)49 Mathematical sciences (for-2020)06 Biological Sciences (for)Artificial Intelligence (cs.AI)Bioinformatics (science-metrix)01 Mathematical Sciences (for)Genomics (mesh)FOS: Biological sciencesDNA (mesh)Sequence AnalysisComputation and Language (cs.CL)Algorithms