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DeNoFo: a file format and toolkit for standardized, comparable de novo gene annotation

Bioinformatics(2025)10.1093/bioinformatics/btaf539Source: DataRank Database

DeNoFo: a file format and toolkit for standardized, comparable de novo gene annotation is a research paper published in Bioinformatics (2025). On theSindex it has a DataRank of 0. It has been cited 4 times.

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0DataRank · unranked

Scored on demand from live citation data

Open Access4 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (7 grants)Impact (FWCI 1.67)OA: goldTopics (15)IDs (PubMed, PMC, OpenAlex)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (7)

Margaux Aubel ORCID,Lars A. Eicholt ORCID,Paul Roginski ORCID,Victor Luria ORCID,Amir Karger ORCID

Live enrichment

PubMed:41051215 PMC:PMC12516307 OpenAlex:https://openalex.org/W4414874463

Deutsche Forschungsgemeinschaft

Grant: 503348080

Deutsche Forschungsgemeinschaft

Grant: BO2544-22-1

Volkswagen foundation

Grant: 98183

Deutsche Forschungsgemeinschaft

Grant: BO 2544/20-1

Postdoctoral Fellowship

Grant: 2023-981550

EMBO Scientific Exchange

Grant: 10944

NIH

Grant: R01NS095654

FWCI

1.67

Citation Percentile

0.8%

Citation Trend

2025

2026

goldLicense: cc-by

journalhttps://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf539/64518926/btaf539.pdf

publisherhttps://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf539/64518926/btaf539.pdf

publisherhttps://academic.oup.com/bioinformatics/article-pdf/41/10/btaf539/64518926/btaf539.pdf

journalhttps://doi.org/10.1093/bioinformatics/btaf539

repositoryhttps://pubmed.ncbi.nlm.nih.gov/41051215

Fields of Study

Genomics and Phylogenetic StudiesGenomics and Rare DiseasesGene expression and cancer classification

MeSH Terms

SoftwareUser-Computer InterfaceComputational BiologyDatabases, GeneticMolecular Sequence Annotation

Keywords

Python (programming language)AnnotationGraphical user interfaceInterface (matter)User interfaceSoftwareLine (geometry)