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Benchmarking large language models for identifying transcription factor regulatory interactions

Bioinformatics(2025)10.1093/bioinformatics/btaf653Source: DataRank Database

Benchmarking large language models for identifying transcription factor regulatory interactions is a research paper published in Bioinformatics (2025). On theSindex it has a DataRank of 0.

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (8 grants)Impact (FWCI 0.00)OA: goldTopics (17)IDs (PubMed, PMC, OpenAlex)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (9)

Yi-Wen Hsiao ORCID,Yimeng He,Andrew J. Hung ORCID,Xiaojiang Cui ORCID,Edward Ray ORCID

Live enrichment

PubMed:41386265 PMC:PMC12766914 OpenAlex:https://openalex.org/W4417304867

National Institutes of Health

Grant: U01 AG066833

National Institutes of Health

Grant: 2R01CA151610

National Institutes of Health

Grant: R21CA280458

National Institutes of Health

Grant: R00CA256519

NCI NIH HHS

Grant: R01 CA151610

Glazer Foundation Award

Jim and Eleanor Department of Surgery Research Award

Samuel Oschin Cancer Institute Research Development Fund

FWCI

0.00

Citation Percentile

0.3%

goldLicense: cc-by

journalhttps://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf653/65858172/btaf653.pdf

publisherhttps://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf653/65858172/btaf653.pdf

journalhttps://doi.org/10.1093/bioinformatics/btaf653

repositoryhttps://pubmed.ncbi.nlm.nih.gov/41386265

repositoryhttps://pmc.ncbi.nlm.nih.gov/articles/PMC12766914/

Fields of Study

Genomics and Chromatin DynamicsMachine Learning in BioinformaticsBioinformatics and Genomic Networks

MeSH Terms

Large Language ModelsHumansProgramming LanguagesTranscription FactorsComputational BiologyBenchmarkingGene Regulatory Networks

Keywords

Python (programming language)Ground truthBenchmarkingPipeline (software)Homo sapiensR packageCommon ground