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The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

Bioinformatics(2003)10.1093/bioinformatics/btg015Source: DataRank Database

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models is a research paper published in Bioinformatics (2003). On theSindex it has a DataRank of 21.6. It has been cited 3,157 times, with 200 citing works in its 1-hop citation network.

N/A

21.6DataRank · unranked

Scored on demand from live citation data

3,157 citations · 200 citing works in its network

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Linked data & code

DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:OA: greenTopics (14)Linked Datasets (16)DataCite Reuse (16)IDs (PubMed)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (0/2)

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (0/3)

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DataRank Breakdown

Base Score 6%Citation Network 94%

Base Score Contribution

1.2

From this paper's citation signal

Citation Network Contribution

20.4

From 200 citing papers with measurable signal

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Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 200 citers.

Pathguide: a Pathway Resource List
Nucleic Acids Research2005440 citations7 referencesContributes 0.870
StochKit2: software for discrete stochastic simulation of biochemical systems with events
Bioinformatics2011154 citations6 referencesContributes 0.841
CellDesigner: a process diagram editor for gene-regulatory and biochemical networks
BIOSILICO2003634 citations10 referencesContributes 0.645
BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains
Bioinformatics2004446 citations11 referencesContributes 0.555
WikiPathways: Pathway Editing for the People
PLoS Biology2008732 citations12 referencesContributes 0.550

Authors (43)

A. Finney,H. M. Sauro,H. Bolouri,J. C. Doyle,H. Kitano

Live enrichment

PubMed:12611808

green

repositoryhttps://doi.org/10.25504/fairsharing.9qv71f

publisherhttps://academic.oup.com/bioinformatics/article-pdf/19/4/524/48903880/bioinformatics_19_4_524.pdf

MeSH Terms

Gene Expression RegulationMetabolismModels, BiologicalModels, ChemicalSoftwareDatabase Management SystemsHypermediaProgramming LanguagesSoftware DesignDocumentationVocabulary, ControlledInformation Storage and RetrievalDatabases, FactualTerminology as Topic

Additional file 1 of Humans and machines in biomedical knowledge curation: hypertrophic cardiomyopathy molecular mechanisms’ representation

10.6084/m9.figshare.16726894.v1figshare

Additional file 1 of Humans and machines in biomedical knowledge curation: hypertrophic cardiomyopathy molecular mechanisms’ representation

10.6084/m9.figshare.16726894figshare

Additional file 2 of Humans and machines in biomedical knowledge curation: hypertrophic cardiomyopathy molecular mechanisms’ representation

10.6084/m9.figshare.16726897.v1figshare

Additional file 2 of Humans and machines in biomedical knowledge curation: hypertrophic cardiomyopathy molecular mechanisms’ representation

10.6084/m9.figshare.16726897figshare

Additional file 3 of Humans and machines in biomedical knowledge curation: hypertrophic cardiomyopathy molecular mechanisms’ representation

10.6084/m9.figshare.16726900.v1figshare

Additional file 3 of Humans and machines in biomedical knowledge curation: hypertrophic cardiomyopathy molecular mechanisms’ representation

10.6084/m9.figshare.16726900figshare

Additional file 4 of Humans and machines in biomedical knowledge curation: hypertrophic cardiomyopathy molecular mechanisms’ representation

10.6084/m9.figshare.16726903.v1figshare

Additional file 4 of Humans and machines in biomedical knowledge curation: hypertrophic cardiomyopathy molecular mechanisms’ representation

10.6084/m9.figshare.16726903figshare

Additional file 5 of Humans and machines in biomedical knowledge curation: hypertrophic cardiomyopathy molecular mechanisms’ representation

10.6084/m9.figshare.16726906.v1figshare

Additional file 5 of Humans and machines in biomedical knowledge curation: hypertrophic cardiomyopathy molecular mechanisms’ representation

10.6084/m9.figshare.16726906figshare

Additional file 6 of Humans and machines in biomedical knowledge curation: hypertrophic cardiomyopathy molecular mechanisms’ representation

10.6084/m9.figshare.16726909.v1figshare

Additional file 6 of Humans and machines in biomedical knowledge curation: hypertrophic cardiomyopathy molecular mechanisms’ representation

10.6084/m9.figshare.16726909figshare

Additional file 1 of Genome-scale metabolic modelling enables deciphering ethanol metabolism via the acrylate pathway in the propionate-producer Anaerotignum neopropionicum

10.6084/m9.figshare.20086051.v1figshare

Additional file 1 of Genome-scale metabolic modelling enables deciphering ethanol metabolism via the acrylate pathway in the propionate-producer Anaerotignum neopropionicum

10.6084/m9.figshare.20086051figshare

Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems

10.4230/lipics.dna.31.4Schloss Dagstuhl – Leibniz-Zentrum für Informatik

FAIRsharing record for: Systems Biology Markup Language

10.25504/fairsharing.9qv71fFAIRsharing