MetaQUAST: evaluation of metagenome assemblies is a research paper published in Bioinformatics (2015). On theSindex it has a DataRank of 0.996. It has been cited 765 times.
UnlabelledDuring the past years we have witnessed the rapid development of new metagenome assembly methods. Although there are many benchmark utilities designed for single-genome assemblies, there is no well-recognized evaluation and comparison tool for metagenomic-specific analogues. In this article, we present MetaQUAST, a modification of QUAST, the state-of-the-art tool for genome assembly evaluation based on alignment of contigs to a reference. MetaQUAST addresses such metagenome datasets features as (i) unknown species content by detecting and downloading reference sequences, (ii) huge diversity by giving comprehensive reports for multiple genomes and (iii) presence of highly relative species by detecting chimeric contigs. We demonstrate MetaQUAST performance by comparing several leading assemblers on one simulated and two real datasets.Availability and implementationhttp://bioinf.spbau.ru/[email protected] informationSupplementary data are available at Bioinformatics online.
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Base Score Contribution
0.996
From this paper's citation signal
Citation Network Contribution
0
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Learn more about DataRank methodology →DataRank blends this paper's own citation count with the influence of the papers that cite it. Here, roughly 100% comes from its base citations and 0% from the citation network.
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