The Distribution and Spread of Susceptible and Resistant Neisseria gonorrhoeae Across Demographic Groups in a Major Metropolitan Center is a dataset published in Clinical Infectious Diseases (2020). On theSindex it has a DataRank of 1.00, placing it in the top 20.3% of the data-sharing corpus. It has been cited 30 times, with 15 citing works in its 1-hop citation network. Its calibrated FAIR score is 67/100.
Ranks in the top 20% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“WGS data were deposited in the European Nucleotide Archive (ERA) under study accession PRJEB10016 ( Supplementary Table 1 ).”
The paper provides a repository accession (PRJEB10016) which is a persistent identifier in the ENA/BioProject scheme.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“WGS data were deposited in the European Nucleotide Archive (ERA) under study accession PRJEB10016 ( Supplementary Table 1 ).”
The paper names the European Nucleotide Archive (ERA) as the repository, which is a proper noun repository listed in re3data.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“WGS data were deposited in the European Nucleotide Archive (ERA) under study accession PRJEB10016 ( Supplementary Table 1 ).”
The dataset identifier PRJEB10016 appears only in the body text, not in the reference list.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“WGS data were deposited in the European Nucleotide Archive (ERA) under study accession PRJEB10016 ( Supplementary Table 1 ). All additional data and scripts are available at https://github.com/gradlab/GC_NYC .”
The statement points to a repository record (ENA) with an accession and to a GitHub repository, both of which are archived locations. [majority verdict 'yes' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The following SHC visit-level data on patients whose isolates were included in the sample were extracted from SHC electronic medical records: gender, age, race/ethnicity, gender of sex partners, anatomic site of specimen collection, and HIV status ( Supplementary Table 1 ).”
The dataset's variables are described in running prose, not in an itemised inventory like a table or list of files. [majority verdict 'partial' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“WGS data were deposited in the European Nucleotide Archive (ERA) under study accession PRJEB10016 ( Supplementary Table 1 ).”
The sentence states deposition in a public repository without any precondition, implying free and open access. [majority verdict 'yes' (4/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“WGS data were deposited in the European Nucleotide Archive (ERA) under study accession PRJEB10016 ( Supplementary Table 1 ).”
The paper describes the action of depositing the data in ENA without labeling the access level with a standard term. [majority verdict 'partial' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are human isolates deposited openly in ENA; no gatekeeper is named and the project is considered public health surveillance, so no controlled access route is provided.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No sentence in the paper specifies when the data become available or how long they will be retained. [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format for the deposited data (e.g., FASTQ) is mentioned in the text.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No community-standard data or metadata standard (e.g., MIAME, GO) is named for the dataset.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“reads from all isolates were mapped to NCCP11945 ( NC_011035.1 )”
The paper cites the reference genome accession NC_011035.1, which is an identifier for an external resource.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No reuse license is stated for the data; the article's CC-BY license applies to the manuscript, not the deposited data.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is provided for the data snapshot; the accession PRJEB10016 is a project-level identifier without versioning.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“All additional data and scripts are available at https://github.com/gradlab/GC_NYC .”
The paper provides a GitHub repository URL, which is a machine-resolvable locator for the code.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“This work was supported by the National Institute of Allergy and Infectious Diseases at the National Institutes of Health [ R01 AI132606 to Y.H.G. and 1 F32 AI145157-01 to T.D.M.] and the Wellcome Trust [ 098051 ].”
The paper includes specific award numbers (R01 AI132606, 1 F32 AI145157-01, 098051) alongside funder names.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Whole genome sequencing (WGS) was performed on the Illumina HiSeq using standard protocols at the Wellcome Sanger Institute.”
The paper names the specific sequencing platform (Illumina HiSeq) and other instruments (QIAamp DNA Mini Kit, NanoDrop) used to produce the data.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“The following SHC visit-level data on patients whose isolates were included in the sample were extracted from SHC electronic medical records: gender, age, race/ethnicity, gender of sex partners, anatomic site of specimen collection, and HIV status ( Supplementary Table 1 ).”
Variable definitions are provided in Supplementary Table 1 within the article, not as a separate documentation file accompanying the data. [majority verdict 'partial' (3/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.515
From this paper's citation signal
Citation Network Contribution
0.484
From 12 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 15 citers.
National Institutes of Health
Grant: R01 AI132606
National Institutes of Health
Grant: 1 F32 AI145157-01
Wellcome Trust
Grant: 098051
NIAID NIH HHS
Grant: F32 AI145157
National Institute of Allergy and Infectious Diseases
FWCI
2.48
Citation Percentile
0.9%
Citation Trend
Fields of Study
MeSH Terms
Keywords
Sustainable Development Goals