lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs is a dataset published in Database (2023). On theSindex it has a DataRank of 0.701, placing it in the top 28.5% of the data-sharing corpus. It has been cited 19 times, with 18 citing works in its 1-hop citation network. Its calibrated FAIR score is 50/100.
Ranks in the top 29% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“All processed and inferred lncRNA data served on lncHUB2 is available for download from: https://maayanlab.cloud/lncHUB2”
The identifier is a web URL, not a persistent identifier scheme.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The lncHUB2 database is available at https://maayanlab.cloud/lncHUB2”
The data are hosted on a project website, not a named repository. [majority verdict 'partial' (4/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The lncHUB2 database is available at https://maayanlab.cloud/lncHUB2”
The dataset URL appears only in body text, not as a reference-list entry.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“All processed and inferred lncRNA data served on lncHUB2 is available for download from: https://maayanlab.cloud/lncHUB2”
The statement points to a website URL, not a repository record, and also includes a request option.
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“lncHUB2 is a database and an Appyter, that produces reports with knowledge about the function and regulation of 18 705 human and 11 274 mouse lncRNAs.”— not found in the paper; verdict downgraded
The dataset's content is described in running prose, not in an itemised inventory. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“All processed and inferred lncRNA data served on lncHUB2 is available for download from: https://maayanlab.cloud/lncHUB2”
The data are stated to be downloadable from a URL with no precondition.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“All processed and inferred lncRNA data served on lncHUB2 is available for download from: https://maayanlab.cloud/lncHUB2”
The paper does not label the access level; it only describes the action of downloading.
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are not sensitive or human-subject, and no gatekeeper is named for the main data.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No persistence commitment or availability timing is stated for the data. [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
“tables and interactive and static visualizations, which are available for download as CSV, HTML and static PNG, SVG and PDF files.”
CSV is an open, community-standard format. [majority verdict 'yes' (3/5 passes agreed)]
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
“Gene Ontology Biological Processes (GO BP) (46), Kyoto Encyclopedia of Genes and Genome (KEGG) pathways (47), DisGeNET diseases (48)”— not found in the paper; verdict downgraded
Data/metadata community standards are named and applied. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“against GENCODE V41, which corresponds to Ensembl 107.”
The paper provides an Ensembl release ID for a resource other than its own dataset. [majority verdict 'yes' (4/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No licence is named for the data.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is given for the data snapshot.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
No code repository URL is provided; only the database URL is given. [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“U24-CA264250, RC2-DK131995, R01-DK131525, U24-CA224260, T32-GM062754, OT2-OD030160”
Award numbers are given with the funder.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“RNAfold v2.5.0 (41) was applied to the cDNA sequence”— not found in the paper; verdict downgraded
Specific tools and versions are named for data production. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“The reports produced for each lncRNA in lncHUB2 contain information about the lncRNA subcellular localization...”— not found in the paper; verdict downgraded
Variable definitions are provided inside the article, not as a separate documentation object shipped with the data. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.449
From this paper's citation signal
Citation Network Contribution
0.251
From 13 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 18 citers.
NIH
Grant: OT2-OD030160
NIH
Grant: R01-DK131525
NIH
Grant: RC2-DK131995
NIH
Grant: T32-GM062754
NIH
Grant: U24-CA224260
NIH
Grant: U24-CA264250
NIDDK NIH HHS
Grant: RC2 DK131995
NCI NIH HHS
Grant: U24 CA264250
NIDDK NIH HHS
Grant: R01 DK131525
NIH HHS
Grant: OT2 OD030160
NIGMS NIH HHS
Grant: T32 GM062754
NCI NIH HHS
Grant: U24 CA224260
National Institutes of Health
Grant: 3OT2OD030160-01S2
The LINCS DCIC Engagement Plan with the CFDE
National Institutes of Health
Grant: 5U24CA224260-05
Knowledge Management Center for Illuminating the Druggable Genome
National Institutes of Health
Grant: 5U24CA264250-02
ARCHS4: Massive Mining of Publicly Available RNA Sequencing Data
National Institutes of Health
Grant: 1RC2DK131995-01
Diabetes Data and Hypothesis Hub (D2H2)
National Institutes of Health
Grant: 5R01DK131525-03
Elucidating the Molecular Mechanisms that Mediate DKD Progression in Patients Living with HIV
National Institutes of Health
Grant: 2T32GM062754-14
Integrated Training in Pharmacological Sciences
FWCI
4.15
Citation Percentile
0.9%
Citation Trend
Fields of Study
MeSH Terms
Keywords