Considering admixture when producing draft genomes: an example in North American ratsnakes (Pantherophis alleghaniensis/Pantherophis obsoletus) is a dataset published in G3 Genes Genomes Genetics (2023). On theSindex it has a DataRank of 0.104, placing it in the top 77.8% of the data-sharing corpus. It has been cited 1 time, with 1 citing works in its 1-hop citation network. Its calibrated FAIR score is 71/100.
Ranks in the top 78% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“10.6084/m9.figshare.21947927”
The paper provides a DOI for the data via Figshare, which is a persistent identifier scheme.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“Raw Chromium 10X, TruSeq, and RNA-Seq data are hosted on the NCBI SRA: SAMN32907824 and PRJNA927268”
The paper names NCBI SRA as a repository for the data, which is a recognised data repository.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“10.6084/m9.figshare.21947927”
The dataset identifier appears only in the body text (Data Availability Statement) and not as a reference-list entry.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The following data are available as follows: (1) Raw Chromium 10X, TruSeq, and RNA-Seq data are hosted on the NCBI SRA: SAMN32907824 and PRJNA927268, (2) assembled and scaffolded Chromium 10X and TruSeq fasta are available on NCBI, JAQZSL000000000 , and BioProject accession number PRJNA926953, and (3) GFT files, Chromium 10X and TruSeq data (unscaffolded and scaffolded), transcriptome data, and diagnostic UCEs are available on Figshare: 10.6084/m9.figshare.21947927.”
The data availability statement points to repositories with accessions and a DOI, fitting Colavizza category 3.
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The following data are available as follows: (1) Raw Chromium 10X, TruSeq, and RNA-Seq data are hosted on the NCBI SRA: SAMN32907824 and PRJNA927268, (2) assembled and scaffolded Chromium 10X and TruSeq fasta are available on NCBI, JAQZSL000000000 , and BioProject accession number PRJNA926953, and (3) GFT files, Chromium 10X and TruSeq data (unscaffolded and scaffolded), transcriptome data, and diagnostic UCEs are available on Figshare: 10.6084/m9.figshare.21947927.”
The data availability statement provides an enumerated list of data types and files, serving as an itemised inventory.
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The following data are available as follows:”
The data availability statement provides routes to the data with no stated precondition such as embargo, registration, or request.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The following data are available as follows:”
The paper describes the data as available but does not apply an explicit access-level label from the standard vocabulary; it only states the action of availability.
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are not sensitive or human-subject, and no gatekeeper of any kind is named in the paper.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“The following data are available as follows:”
The paper states that the data are available but gives no commitment to how long they will persist. [majority verdict 'partial' (3/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
“assembled and scaffolded Chromium 10X and TruSeq fasta are available on NCBI”
The format token 'fasta' is named, which is an open, community-standard format. [majority verdict 'yes' (4/5 passes agreed)]
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
“provide gene ontology (GO) annotations”
The paper uses the Gene Ontology (GO), a community standard OBO ontology, for annotation. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“the Thamnophis elegans (NCBI assembly GCF_009769535.1) genome as a reference”
The paper provides a qualified reference to the Thamnophis elegans genome assembly accession.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No licence or reuse terms are stated for the data; the article's CC BY licence applies only to the paper itself.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“The assembled genome from AMNH R-178746 is referred to from here on as PanAll1.0.”
The assembly is given a version-like name (PanAll1.0), which identifies the snapshot of the data. [majority verdict 'yes' (3/5 passes agreed)]
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
No locator for the study's own code is provided; only third-party tools are named.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“Dimensions USBIOTA 1831241”
The paper provides a specific grant number attached to a named funder. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“sequenced on an Illumina NovaSeq 6000”
The paper names the specific instrument used for sequencing.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (e.g., README, data dictionary) is mentioned as accompanying the data, and no variable-definition table appears inside the article. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.104
From this paper's citation signal
Citation Network Contribution
0
From 0 citing papers with measurable signal
This paper's DataRank is currently driven only by its base citation score. None of the citing papers had measurable citation signal.
Learn more about DataRank methodology →National Science Foundation
Grant: USBIOTA 1831241
National Institute of Health
Grant: 2P20GM103432
NIGMS NIH HHS
Grant: P20 GM103432
National Institutes of Health
Grant: 5P20GM103432-13
Wyoming IDeA Networks of Biomedical Research Excellence
National Science Foundation
Grant: 1831241
Dimensions USBIOTA- Sao Paulo: Collaborative Proposal: Traits as predictors of adaptive diversification along the Brazilian Dry Diagonal
Richard Gilder Graduate School
National Institute of General Medical Sciences
Theodore Roosevelt Postdoctoral Fellowship
FWCI
0.09
Citation Percentile
0.4%
Citation Trend
Fields of Study
MeSH Terms
Keywords
Sustainable Development Goals