Genome Report: chromosome-scale genome assembly of the African spiny mouse (Acomys cahirinus) is a dataset published in G3 Genes Genomes Genetics (2023). On theSindex it has a DataRank of 0.421, placing it in the top 44% of the data-sharing corpus. It has been cited 7 times, with 7 citing works in its 1-hop citation network. Its calibrated FAIR score is 65/100.
Ranks in the top 44% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The scaffolded genome assembly and gff3 files are also available at https://doi.org/10.5281/zenodo.7761277 .”
The paper provides a DOI (10.5281/zenodo.7761277) for the genome assembly and annotation files, which is a persistent identifier scheme. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The scaffolded genome assembly, RNA sequencing data, and original Nanopore data are available at NCBI under bioproject PRJNA935753.”
NCBI is a named repository that is listed in re3data and issues accessions.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The scaffolded genome assembly, RNA sequencing data, and original Nanopore data are available at NCBI under bioproject PRJNA935753.”
The dataset identifier appears only in the body text (Data availability section) and not as a reference-list entry. [majority verdict 'partial' (4/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The scaffolded genome assembly, RNA sequencing data, and original Nanopore data are available at NCBI under bioproject PRJNA935753.”
The statement points to a repository record with an accession (PRJNA935753), matching Colavizza category 3. [majority verdict 'yes' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The scaffolded genome assembly, RNA sequencing data, and original Nanopore data are available at NCBI under bioproject PRJNA935753.”
The paper describes the dataset content in running prose (listing the types of data) but without an itemised inventory or section heading.
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The scaffolded genome assembly, RNA sequencing data, and original Nanopore data are available at NCBI under bioproject PRJNA935753.”
The data are stated to be available at a public repository without any precondition such as request, embargo, or registration.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The scaffolded genome assembly, RNA sequencing data, and original Nanopore data are available at NCBI under bioproject PRJNA935753.”
The paper describes the action of obtaining the data via a repository link but does not apply an explicit access-level label such as 'open access' or 'restricted access'. [majority verdict 'partial' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are not sensitive or human-subject, and no gatekeeper of any kind is named in the text.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No sentence in the paper states when the data become available or how long they persist. [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
“gff3 files”— not found in the paper; verdict downgraded
The paper explicitly names GFF3, an open, community-standard file format for genome annotations. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard from FAIRsharing (e.g., MIAME, MINSEQE, an ontology) is named in the text. [majority verdict 'no' (3/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“SRX13258644”
The paper provides an SRA accession (SRX13258644) for a Hi-C library that was used but not produced by the study. [majority verdict 'yes' (4/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The paper does not state a license for the data itself; the CC-BY license applies to the article only.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“The version described in this paper is version JAULSH010000000.”— not found in the paper; verdict downgraded
The paper explicitly states a version string (JAULSH010000000) for the genome assembly. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
No locator (repository URL, DOI, or package identifier) is given for the study's own analysis code.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“R01DK114149”
The paper lists grant numbers, including NIH R01DK114149, attached to a named funder.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Flye version 2.9”
The paper names specific software versions, such as Flye 2.9, used to produce the assembly.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object such as a README or data dictionary is stated to accompany the data, and no variable-definition table is present in the article. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.312
From this paper's citation signal
Citation Network Contribution
0.109
From 5 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 7 citers.
NIH
Grant: R01DK114149
NIH
Grant: R21OD023838
NIH
Grant: R21OD030107
Impetus Longevity Award
Grant: DP5OD033357
Brotman Baty Institute
Grant: U54CA217376
Brotman Baty Institute
Grant: 5P50HD103524-03
Intellectual and Developmental Disabilities Research Center
NEI NIH HHS
Grant: F32 EY015631
NEI NIH HHS
Grant: L40 EY016882
NICHD NIH HHS
Grant: P50 HD103524
National Institutes of Health
Grant: 1R21OD023838-01
New transgenic tools for mammalian fibrosis and regenerative repair research
National Institutes of Health
Grant: 5U54CA217376-05
Arizona Cancer and Evolution Center (ACE)
National Institutes of Health
Grant: 5R01DK114149-03
Acomys cahrinus: a new paradigm for kidney wound repair
National Institutes of Health
Grant: 1DP5OD033357-01
Long-read DNA and RNA sequencing to identify disease-causing genetic variation and streamline testing
National Institutes of Health
Grant: 5R21OD030107-02
Building transgenic tools in Acomys cahirinus, an emerging model for mammalian regenerative biology and healthy aging
Seattle Research Institute Center for Developmental Biology and Regenerative Medicine
Keck Foundation for BioMedical Research
Howard Hughes Medical Institute
Seattle Research Institute Center for Integrative Brain Research
Howard Hughes Medical Institute
FWCI
0.64
Citation Percentile
0.6%
Citation Trend
Fields of Study
MeSH Terms
Keywords
Sustainable Development Goals