Chromosome-Level Reference Genomes for Two Strains of Caenorhabditis briggsae : An Improved Platform for Comparative Genomics is a dataset published in Genome Biology and Evolution (2022). On theSindex it has a DataRank of 1.1, placing it in the top 19.2% of the data-sharing corpus. It has been cited 46 times, with 33 citing works in its 1-hop citation network. Its calibrated FAIR score is 69/100.
Ranks in the top 19% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“PRJNA784955”
The paper provides an NCBI BioProject accession, which is a persistent identifier scheme.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“Raw sequencing data and genome assembly and annotation files have been archived under the NCBI study accession PRJNA784955.”
NCBI is named as the repository hosting the data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“Raw sequencing data and genome assembly and annotation files have been archived under the NCBI study accession PRJNA784955.”
The dataset identifier PRJNA784955 appears only in the body text, not in the reference list.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Raw sequencing data and genome assembly and annotation files have been archived under the NCBI study accession PRJNA784955.”
The statement points to a repository with an accession (NCBI BioProject) – Colavizza category 3.
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“Table 1 Reference genome metrics”
The paper includes an itemised table (Table 1) detailing the dataset's attributes.
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“Raw sequencing data and genome assembly and annotation files have been archived under the NCBI study accession PRJNA784955.”
The data are deposited in a public repository without any stated precondition.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“Raw sequencing data and genome assembly and annotation files have been archived under the NCBI study accession PRJNA784955.”
The paper does not label the access level with a standard term, but describes an action (archiving at NCBI) from which open access can be inferred. [majority verdict 'partial' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are not human-subject or sensitive, so no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“Raw sequencing data and genome assembly and annotation files have been archived under the NCBI study accession PRJNA784955.”
The statement indicates current availability but does not specify a persistence period. [majority verdict 'partial' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format is named for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No community data or metadata standard (e.g., MIAME, BIDS) is named for the data.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“PRJNA13758”
The paper references other datasets via their accessions, e.g., the C. elegans N2 accession PRJNA13758 in Table 1.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No reuse licence is stated for the data itself; the article's CC BY licence does not apply to the data.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“v1”— not found in the paper; verdict downgraded
The assemblies are assigned version 'v1' in Table 1. [downgraded to 'partial' — no verifiable quote from the paper]
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“https://github.com/AndersenLab/briggsae_reference_genome_MS”
The code is deposited in a GitHub repository, providing a machine-resolvable locator.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“R01 ES029930”
The paper provides a specific grant number (R01 ES029930) from a named funder (NIH).
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Oxford Nanopore PromethION platform”
The paper names specific instruments and software used to produce the data.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“Table 1 Reference genome metrics”
Variable definitions (genome metrics) are provided inside the article in a table, not as a separate file shipped with the data. [majority verdict 'partial' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.578
From this paper's citation signal
Citation Network Contribution
0.477
From 25 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 33 citers.
NIGMS NIH HHS
Grant: R35 GM122502
NIEHS NIH HHS
Grant: R01 ES029930
NIGMS NIH HHS
Grant: T32 GM008449
National Institutes of Health
Grant: 5R35GM122502-09
Gene regulatory and metabolic network structure, function and evolution
National Institutes of Health
Grant: 5R01ES029930-04
Discovery of conserved molecular mechanisms underlying population-wide variation in toxin responses
National Institutes of Health
Grant: 5T32GM008449-14
Biotechnology Predoctoral Training Program
Howard Hughes Medical Institute
Howard Hughes Medical Institute
FWCI
3.04
Citation Percentile
0.9%
Citation Trend
Fields of Study
MeSH Terms
Keywords