Chromosome-Level Genome Assembly of the Bioluminescent Cardinalfish Siphamia tubifer: An Emerging Model for Symbiosis Research is a dataset published in Genome Biology and Evolution (2022). On theSindex it has a DataRank of 0.522, placing it in the top 37.1% of the data-sharing corpus. It has been cited 11 times, with 7 citing works in its 1-hop citation network. Its calibrated FAIR score is 50/100.
Ranks in the top 37% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“PRJNA736963”
The paper provides the NCBI BioProject accession PRJNA736963 for the dataset, which is a persistent identifier scheme.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“NCBI”— not found in the paper; verdict downgraded
The paper names NCBI as the repository where the data are deposited, and NCBI is a curated data repository. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“All raw sequencing and genome assembly data of Siphamia tubifer have been deposited at NCBI under accession number PRJNA736963.”
The dataset identifier (PRJNA736963) appears only in the body text (Data Availability section), not as a reference-list entry.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“All raw sequencing and genome assembly data of Siphamia tubifer have been deposited at NCBI under accession number PRJNA736963. Genome assembly and associated sequencing data are available under NCBI Bioproject PRJNA736963.”
The data availability statement points to a repository (NCBI) with a specific accession, constituting category 3 (link to archived data in a public repository).
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The final assembly was 1.2 Gb distributed on 23 chromosomes and contained 32,365 protein coding genes with a BUSCO score of 99%.”
The dataset's content is described in running prose, not in an itemised inventory such as a section, table, or list.
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“All raw sequencing and genome assembly data of Siphamia tubifer have been deposited at NCBI under accession number PRJNA736963.”
The text states the data are deposited at NCBI with an accession, implying public availability without any stated precondition.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“Genome assembly and associated sequencing data are available under NCBI Bioproject PRJNA736963.”
The paper describes the access action of the data being available under a Bioproject, but does not apply an explicit access-level label such as 'open access' or 'publicly available'.
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are genome assembly and sequencing from a non-human organism, not sensitive or human-subject data, and no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
Neither a persistence commitment nor an availability timing statement is provided for this study's data. [majority verdict 'no' (3/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not specify the file format of the deposited data, so no open or proprietary format token is named.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No community data or metadata standard (e.g., minimum information checklist, ontology, or schema) is named in the paper. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“GCF_902148855.1”
The paper includes identifiers for external resources, such as the Sphaeramia orbicularis genome assembly (RefSeq accession GCF_902148855.1). [majority verdict 'yes' (4/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The only license mentioned is for the article itself (CC BY-NC 4.0), not for the dataset; no license or terms are attached to the data.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is provided for the dataset; the accession PRJNA736963 does not include a version number.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
The paper mentions custom scripts but offers no locator or route to obtain the code.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“NIH-DP5-OD026405-01”
The paper provides an award/grant number (NIH-DP5-OD026405-01) attached to a named funder (National Institutes of Health).
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“PacBio HiFi sequencing”
The paper names specific instruments and software used to produce the data, including PacBio HiFi sequencing and the Illumina NovaSeq 6000 platform.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“Additional per chromosome details of genes, exons, and introns are outlined in table S2, Supplementary Material online.”
Variable-level definitions are provided in supplementary tables inside the article, not in a file shipped with the data. [majority verdict 'partial' (3/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.373
From this paper's citation signal
Citation Network Contribution
0.149
From 6 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 7 citers.
NIGMS NIH HHS
Grant: T32 GM008449
NIGMS NIH HHS
Grant: R35 GM122502
NIH HHS
Grant: DP5 OD026405
NIEHS NIH HHS
Grant: R01 ES029930
National Institutes of Health
Grant: 5DP5OD026405-02
Investigating mechanisms of specificity in a bioluminescent vertebrate-bacteria symbiosis
FWCI
0.76
Citation Percentile
0.7%
Citation Trend
Fields of Study
MeSH Terms
Keywords
Sustainable Development Goals