De Novo Genome Assembly for the Coppery Titi Monkey (Plecturocebus cupreus): An Emerging Nonhuman Primate Model for Behavioral Research is a dataset published in Genome Biology and Evolution (2024). On theSindex it has a DataRank of 0.251, placing it in the top 59.8% of the data-sharing corpus. It has been cited 4 times, with 2 citing works in its 1-hop citation network. Its calibrated FAIR score is 63/100.
Ranks in the top 60% for downstream scientific impact
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“All sequence data has been deposited under NCBI BioProject PRJNA1068557.”
The paper provides a BioProject accession (PRJNA1068557), which is a persistent identifier in a standard scheme.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“This Whole Genome Shotgun project has been deposited at DDBJ/ENA/GenBank under the accession JBDJOS000000000.”
DDBJ/ENA/GenBank are named repositories that are listed in re3data/FAIRsharing.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“All sequence data has been deposited under NCBI BioProject PRJNA1068557.”
The dataset identifier appears only in the body text (Data Availability section) and not as a reference-list entry.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“This Whole Genome Shotgun project has been deposited at DDBJ/ENA/GenBank under the accession JBDJOS000000000. The version described in this paper is version JBDJOS010000000. All sequence data has been deposited under NCBI BioProject PRJNA1068557.”
The data-availability statement points to a repository record with accession numbers, fitting Colavizza category 3.
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“Table 1 Contiguity and completeness of the coppery titi monkey genome assembly”
The paper includes a table (Table 1) that itemises contiguity and completeness statistics of the genome assembly, serving as an itemised inventory. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“All sequence data has been deposited under NCBI BioProject PRJNA1068557.”
The data are deposited in a public repository without any stated precondition (embargo, request, registration, or fee).
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“All sequence data has been deposited under NCBI BioProject PRJNA1068557.”
The paper describes the action of depositing the data but does not explicitly label the access level (e.g., 'open access') for the data itself.
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are from a nonhuman primate and are not sensitive or human-subject, so no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“All sequence data has been deposited under NCBI BioProject PRJNA1068557.”
The paper states that the data are deposited and thus available now, but does not commit to a retention period. [majority verdict 'partial' (3/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not explicitly name any file format (e.g., FASTA, FASTQ) for the deposited data, only referring to raw sequence data generically.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard (e.g., MIAME, BIDS, an ontology) is named for the dataset; the paper mentions tools like BUSCO but not a standard.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“telomere-to-telomere human genome assembly (T2T-CHM13v2.0 downloaded from NCBI RefSeq)”— not found in the paper; verdict downgraded
The paper gives identifiers for external resources, such as the human genome assembly (T2T-CHM13v2.0) and other genome accessions. [downgraded to 'no' — no verifiable quote from the paper]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The paper does not attach a license to the data; the CC-BY-NC license applies only to the article, not the dataset.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“The version described in this paper is version JBDJOS010000000.”
The paper provides a version token (JBDJOS010000000) for the deposited data.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
No code repository or locator is given for the study's own code; only third-party tools are mentioned.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“National Science Foundation CAREER award (DEB-2045343)”
The paper lists specific grant numbers (e.g., DEB-2045343, R35GM151008) attached to named funders. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“The library was then paired-end sequenced (2 × 150 bp) on an Illumina NovaSeq 6000”
The paper names specific instruments, kits, and software versions used to produce the data (e.g., Illumina NovaSeq 6000, Flye 2.8.1).
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“The final de novo assembly of the coppery titi monkey exhibits a total length of 2.76 Gb—similar to the genome sizes reported for other Pitheciidae for which short-read (150 bp paired-end Illumina) assemblies were recently released (ranging from 2.61 Gb for the Aracá uakari [Cacajao ayresi] to 2.74 Gb for the red-nosed bearded saki [Chiropotes albinasus]; Kuderna et al. 2023)—and comprises 1,288 scaffolds with a scaffold N50 of 130.8 Mb.”— not found in the paper; verdict downgraded
The dataset's content and size are described in running prose, not in a separate documentation object like a codebook or README. [downgraded to 'no' — no verifiable quote from the paper]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.241
From this paper's citation signal
Citation Network Contribution
9.61 × 10⁻³
From 2 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 2 citers.
California National Primate Research Center
Grant: NIH P51OD011107
National Science Foundation CAREER
Grant: DEB-2045343
National Institutes of Health
Grant: R35GM151008
National Institutes of Health
Grant: NIH R01HD092055
National Institutes of Health
Grant: MH125411
NIH HHS
Grant: P51 OD011107
NICHD NIH HHS
Grant: R01 HD092055
NIMH NIH HHS
Grant: R01 MH125411
NIH HHS
Grant: S10 OD010786
National Institutes of Health
Grant: 1S10OD010786-01
Acquisition of Covaris E220 and Sciclone G3 systems for high throughput sequencin
National Institutes of Health
Grant: 5R01MH125411-05
Kappa opioid and oxytocin interactions in social buffering and separation
National Institutes of Health
Grant: 5R35GM151008-03
Characterizing the full spectrum of genomic variation in biomedically-relevant primates
National Institutes of Health
Grant: 5R01HD092055-05
THE NEURAL BASIS OF PAIR-BONDING IN FEMALE TITI MONKEYS
National Institutes of Health
Grant: 8P51OD011107-51
California National Primate Research Center
National Science Foundation
Grant: 2045343
CAREER: Characterizing the rates and patterns of mutation and recombination in Old and New World monkeys
Good Nature Institute
Good Nature Institute
FWCI
0.82
Citation Percentile
0.7%
Citation Trend
Fields of Study
MeSH Terms
Keywords
Sustainable Development Goals