Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources is a dataset published in Genetics (2023). On theSindex it has a DataRank of 3.1, placing it in the top 7.1% of the data-sharing corpus. It has been cited 142 times, with 100 citing works in its 1-hop citation network. Its calibrated FAIR score is 46/100.
Ranks in the top 7% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
The paper does not assign a persistent identifier to any dataset generated by this study; the article's DOI is for the paper, not the data.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
No repository is named as the holder of a dataset generated by this study; the paper describes the SGD database, which is a resource, not a repository for this study's data. [majority verdict 'no' (4/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
No dataset identifier appears anywhere in the paper because no dataset was generated by this study.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“All information and materials provided by SGD are available with the Creative Commons Attribution 4.0 International (CC BY 4.0) license.”
The statement points to the SGD resource rather than a repository record, fitting Colavizza category 2 (data contained within the article/institution). [majority verdict 'partial' (3/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
The paper does not provide an itemised inventory of a dataset from this study; it describes the SGD database structure. [majority verdict 'no' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“All information and materials provided by SGD are available with the Creative Commons Attribution 4.0 International (CC BY 4.0) license.”
The sentence states unconditional availability with no precondition. [majority verdict 'yes' (3/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
The paper does not label the access level of any dataset generated by this study because no dataset was generated; the Data Availability statement refers to the SGD database, not to this study's own data. [majority verdict 'no' (2/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
No sensitive or human-subject data are generated by this study, so no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
The paper makes no temporal commitment about the availability or persistence of any dataset generated by this study. [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format is named for any dataset generated by this study because no dataset was deposited.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
“SGD has been the authority for the S. cerevisiae reference genome ( http://sgd-archive.yeastgenome.org/sequence/S288C_reference/ ; Cherry et al. 2012 ), including gene annotation and nomenclature”
The paper applies systematic nomenclature and references the Gene Ontology, a community standard. [majority verdict 'yes' (3/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“Secondary structures for RNAs from RNAcentral ( https://rnacentral.org/ ; RNAcentral Consortium 2021 ).”
The paper provides a repository URL for an external resource, qualifying as an identifier. [majority verdict 'yes' (3/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
“All information and materials provided by SGD are available with the Creative Commons Attribution 4.0 International (CC BY 4.0) license.”
The paper states that the SGD database is available under the CC BY 4.0 license, which is an open standard licence. As the study describes updates to SGD, this licence applies to the data of this study. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is given for a dataset from this study.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“SGD includes a modifiable Dockerfile as part of our source code repositories located at https://github.com/yeastgenome/ .”
A machine-resolvable code repository URL is provided. [majority verdict 'yes' (3/5 passes agreed)]
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“Research reported in this publication was supported by the National Human Genome Research Institute of the National Institutes of Health under Award Numbers U24HG001315, U24HG010859, and U24HG012212.”
The paper lists specific grant award numbers from a named funder.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
The paper describes methods for updating the SGD database, not the production of a specific dataset from this study. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“Table 1. New systematic gene names for genes not found in the reference genome.”
Variable definitions are provided inside the article in Table 1, not as a separate documentation object shipped with the data. [majority verdict 'partial' (3/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.744
From this paper's citation signal
Citation Network Contribution
2.4
From 95 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 100 citers.
National Institutes of Health
Grant: U24HG001315
National Institutes of Health
Grant: U24HG010859
National Institutes of Health
Grant: U41HG002273
NHGRI NIH HHS
Grant: P41 HG001315
NHGRI NIH HHS
Grant: U24 HG012212
National Institutes of Health
Grant: 5U24HG012212-04
Gene Ontology Consortium and Knowledgebase
National Institutes of Health
Grant: 5U24HG001315-30
Genomic Resource for the Yeast Saccharomyces
National Institutes of Health
Grant: 5U24HG010859-05
Alliance Central: A platform for sustainable development of next generation genome knowledgebases
National Human Genome Research Institute
FWCI
13.21
Citation Percentile
1.0%
Citation Trend
Fields of Study
MeSH Terms
Keywords
Sustainable Development Goals
Additional file 1 of Did the early full genome sequencing of yeast boost gene function discovery?
Additional file 1 of Did the early full genome sequencing of yeast boost gene function discovery?
Additional file 2 of Did the early full genome sequencing of yeast boost gene function discovery?
Additional file 2 of Did the early full genome sequencing of yeast boost gene function discovery?
Additional file 3 of Did the early full genome sequencing of yeast boost gene function discovery?
Additional file 3 of Did the early full genome sequencing of yeast boost gene function discovery?