Expanding TheCellVision.org: a central repository for visualizing and mining high-content cell imaging projects is a dataset published in Genetics (2024). On theSindex it has a DataRank of 0.159, placing it in the top 70.2% of the data-sharing corpus. It has been cited 1 time, with 1 citing works in its 1-hop citation network. Its calibrated FAIR score is 50/100.
Ranks in the top 70% for downstream scientific impact
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“Raw images and segmented single-cell crops associated with PIFiA are available for download at https://thecellvision.org/pifia_files .”
The only identifier given is a web URL, not a persistent identifier scheme (DOI, Handle, ARK, URN, or repository accession).
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“Raw images and segmented single-cell crops associated with PIFiA are available for download at https://thecellvision.org/pifia_files”
TheCellVision.org is named as the host, but it is not a recognised curated archive that issues accessions/DOIs; it is a non-repository host. [majority verdict 'partial' (3/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“Raw images and segmented single-cell crops associated with PIFiA are available for download at https://thecellvision.org/pifia_files .”
The dataset's identifier (URL) appears only in the body text, not in the reference list.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Microscopy images, datasets, and computational tools associated with the previous projects are available as described in Masinas et al. (2020). Raw images and segmented single-cell crops associated with PIFiA are available for download at https://thecellvision.org/pifia_files . Bulk download of images from Cell Cycle Omics can be provided upon request.”— not found in the paper; verdict downgraded
The statement points to a repository website (TheCellVision.org) for PIFiA and to a request mechanism for Cell Cycle Omics, but not to a persistent repository record with an accession or DOI. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (2/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“Cell Cycle Omics contains genome-scale data for the cell cycle-resolved protein concentration, protein localization, gene expression, and translational efficiency dynamics in budding yeast. The data include 129,525 microscopy images of >20 million live cells...”— not found in the paper; verdict downgraded
The dataset is described in running prose with no itemised inventory (section, table, or enumerated list of files/variables). [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“Raw images and segmented single-cell crops associated with PIFiA are available for download at https://thecellvision.org/pifia_files .”
The PIFiA data are available via a direct download link with no stated precondition, satisfying unconditional access.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“Raw images and segmented single-cell crops associated with PIFiA are available for download at https://thecellvision.org/pifia_files . Bulk download of images from Cell Cycle Omics can be provided upon request.”
The Data availability section describes access actions (download URL and request) but does not apply an explicit access-level label from the controlled vocabulary. [majority verdict 'partial' (3/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
“Bulk download of images from Cell Cycle Omics can be provided upon request.”
The data are not human-subject or sensitive; the only gatekeeper mentioned is a personal request to the authors, which is not classified as an institutional gatekeeper. [majority verdict 'no' (4/5 passes agreed)]
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
The paper makes no statement about when the data are available or how long they persist.
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format token is named for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard (minimum information checklist, ontology, schema) is named for the data. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“Source code and usage examples for PIFiA are available at https://github.com/arazd/PIFiA . The code for CycleNET, the supervised neural network used in Cell Cycle Omics for protein localization and cell cycle classification is available at https://github.com/BooneAndrewsLab/CycleNET .”
Code repository URLs are given for the study's own code, which are identifiers for resources other than the dataset itself.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No licence is named for the data themselves; the CC BY-NC-ND licence applies to the article only.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is given to identify the snapshot of the data.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“Source code and usage examples for PIFiA are available at https://github.com/arazd/PIFiA . The code for CycleNET, the supervised neural network used in Cell Cycle Omics for protein localization and cell cycle classification is available at https://github.com/BooneAndrewsLab/CycleNET .”
GitHub repository URLs are provided as machine-resolvable locators for the study's own code.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“A.L. holds a Canadian Institutes of Health Research Fellowship (MFE - 187913). This work was supported by grants from the National Institutes of Health (R01HG005853 to B.A., C.B.), and the Canadian Institutes of Health Research (PJT-180259 to B.A.).”
Award/grant numbers are given for each funder.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“DeepLoc, a deep convolutional neural network (CNN) for automated classification of proteins to different subcellular compartments”
The paper names specific tools and instruments used to produce the data. [majority verdict 'yes' (3/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (README, data dictionary, codebook) is named as accompanying the data; variable definitions are not given in a separate object. [majority verdict 'no' (3/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.104
From this paper's citation signal
Citation Network Contribution
0.0551
From 1 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 1 citer.
CIHR Fellowship
Grant: MFE - 187913
National Institutes of Health
Grant: R01HG005853
Canadian Institutes of Health Research
Grant: PJT-180259
National Institutes of Health
Grant: 1R01HG005853-01
Mapping the reference genetic network of a eukaryotic cell
Canadian Institutes of Health Research
Grant: unidentified
unidentified
FWCI
0.52
Citation Percentile
0.8%
Citation Trend
Fields of Study
MeSH Terms
Keywords
Sustainable Development Goals