DiMB-RE: mining the scientific literature for diet-microbiome associations is a dataset published in Journal of the American Medical Informatics Association (2025). On theSindex it has a DataRank of 0.371, placing it in the top 48.4% of the data-sharing corpus. It has been cited 8 times, with 7 citing works in its 1-hop citation network. Its calibrated FAIR score is 50/100.
Ranks in the top 48% for downstream scientific impact
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“https://github.com/ScienceNLP-Lab/DiMB-RE”
The given locator is a web address that is not a persistent identifier scheme (DOI, Handle, ARK, URN, or repository accession). [majority verdict 'partial' (4/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“DiMB-RE and the NLP models are available at https://github.com/ScienceNLP-Lab/DiMB-RE”
GitHub is a code-hosting platform, not a data repository listed in re3data/FAIRsharing. [majority verdict 'partial' (4/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“Data availability DiMB-RE and the NLP models are available at https://github.com/ScienceNLP-Lab/DiMB-RE”
The dataset identifier appears only in the body text (Data availability section), not as a reference-list entry. [majority verdict 'partial' (4/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Data availability DiMB-RE and the NLP models are available at https://github.com/ScienceNLP-Lab/DiMB-RE”
The statement points to a GitHub repository, which is not a curated data repository record with an accession or persistent identifier. [majority verdict 'partial' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“Table 1. Descriptive statistics of DiMB-RE.”
The paper includes a table that itemises the dataset's size and composition (entities, triggers, relations).
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“DiMB-RE and the NLP models are available at https://github.com/ScienceNLP-Lab/DiMB-RE”
The data are stated to be available at a public GitHub repository with no precondition. [majority verdict 'yes' (4/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“DiMB-RE and the NLP models are available at https://github.com/ScienceNLP-Lab/DiMB-RE”
The paper describes where the data can be obtained but does not use an explicit access-level label from the standard vocabulary. [majority verdict 'partial' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are not sensitive or human-subject, and no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No statement about how long the data will persist or when they become available appears in the text.
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format is named for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
“Thirteen relation types were adapted from the UMLS Semantic Network and the Biolink model, which formalizes entity and relationship types for translational science.”— not found in the paper; verdict downgraded
The paper names UMLS Semantic Network and Biolink model as community standards applied to the data. [downgraded to 'partial' — no verifiable quote from the paper]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“PMID: 33509667”
The paper gives a PubMed identifier for an external resource (a specific abstract) used in the annotation. [majority verdict 'yes' (3/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No licence is named for the data; the CC BY 4.0 licence applies only to the article.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is given for the DiMB-RE corpus.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“DiMB-RE and the NLP models are available at https://github.com/ScienceNLP-Lab/DiMB-RE”
A code-forge URL is provided for the study's own code. [majority verdict 'yes' (4/5 passes agreed)]
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“U01AT012871”
The paper gives a specific grant number assigned to a named funder.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Annotation was performed over several stages using Brat annotation tool.”
The paper names the specific tool (Brat) used to produce the annotations. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“The annotation guidelines are provided in Appendix S2 .”
The documentation (annotation guidelines) is inside the article appendix, not shipped with the data. [majority verdict 'partial' (3/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.330
From this paper's citation signal
Citation Network Contribution
0.0410
From 3 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 7 citers.
Office of Data Science Strategy
Grant: U01AT012871
Bridges-2 and Ocean at Pittsburgh Supercomputing Center
Grant: #CIS230099
National Science Foundation
Grant: #2138259
National Science Foundation
Grant: #2138286
National Science Foundation
Grant: #2138307
National Science Foundation
Grant: #2137603
National Science Foundation
Grant: #2138296
NIH HHS
National Institutes of Health
Advanced Cyberinfrastructure Coordination Ecosystem: Services & Support
University of Illinois Personalized Nutrition Initiative
Advanced Cyberinfrastructure Coordination Ecosystem: Services & Support
University of Illinois Personalized Nutrition Initiative Seed
National Center for Complementary and Integrative Health
University of Illinois Personalized Nutrition Initiative Seed
University of Illinois Personalized Nutrition Initiative
Advanced Cyberinfrastructure Coordination Ecosystem: Services & Support
NIH HHS
FWCI
3.89
Citation Percentile
0.9%
Citation Trend
Fields of Study
MeSH Terms
Keywords