Linking rare and common disease vocabularies by mapping between the human phenotype ontology and phecodes is a dataset published in JAMIA Open (2023). On theSindex it has a DataRank of 0.981, placing it in the top 20.7% of the data-sharing corpus. It has been cited 18 times, with 16 citing works in its 1-hop citation network. Its calibrated FAIR score is 38/100.
Ranks in the top 21% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“McArthur E, Capra JA. Mapping between Human Phenotype Ontology and phecode terminologies. Dryad Digital Repository, Dataset 2023. 10.7272/Q6H70D20 .”— not found in the paper; verdict downgraded
The paper includes a DOI in the reference list for the dataset. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“All final mappings described in Figure 2, Supplementary Figure S9, and all other data we generated are available in the Dryad digital repository”— not found in the paper; verdict downgraded
Dryad is a data repository listed in re3data/FAIRsharing. [downgraded to 'partial' — no verifiable quote from the paper]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“McArthur E, Capra JA. Mapping between Human Phenotype Ontology and phecode terminologies. Dryad Digital Repository, Dataset 2023. 10.7272/Q6H70D20 .”— not found in the paper; verdict downgraded
The dataset's DOI appears as a reference-list entry. [downgraded to 'partial' — no verifiable quote from the paper]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“All final mappings described in Figure 2, Supplementary Figure S9, and all other data we generated are available in the Dryad digital repository 32 and GitHub repository 'phecode-HPO-map' ( https://github.com/emcarthur/phecode-HPO-map ).”— not found in the paper; verdict downgraded
The statement points to a repository record (Dryad) with a DOI, meeting Colavizza category 3. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“Our mapping identifies 10 579 links between phecodes and HPO terms, and an additional 28 371 links when including the children of HPO terms for a total of 38 950 unique links.”
The dataset's content is described in running prose, not in an itemised section, table, or list. [majority verdict 'partial' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“All final mappings described in Figure 2, Supplementary Figure S9, and all other data we generated are available in the Dryad digital repository 32 and GitHub repository 'phecode-HPO-map' ( https://github.com/emcarthur/phecode-HPO-map ).”— not found in the paper; verdict downgraded
The text provides a direct route to the data with no stated precondition. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“All final mappings described in Figure 2, Supplementary Figure S9, and all other data we generated are available in the Dryad digital repository 32 and GitHub repository 'phecode-HPO-map' ( https://github.com/emcarthur/phecode-HPO-map ).”— not found in the paper; verdict downgraded
The text describes where to download the data but does not use an explicit access-level label. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The dataset is not sensitive; no gatekeeper is mentioned.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
Neither availability timing nor persistence is stated for the study's data.
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format is named for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
“the Human Phenotype Ontology (HPO) is a standard lexicon”
HPO is a community-standard ontology registered in FAIRsharing. [majority verdict 'yes' (3/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“Phecodes and their ICD9/10 mappings ( https://phewascatalog.org/phecodes )”
A repository URL is given for the source phecode data. [majority verdict 'yes' (3/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No license is stated for the data.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“McArthur E, Capra JA. Mapping between Human Phenotype Ontology and phecode terminologies. Dryad Digital Repository, Dataset 2023.”— not found in the paper; verdict downgraded
The reference entry includes a year, providing a date for the snapshot. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“The custom code we generated are available in the GitHub repository 'phecode-HPO-map' ( https://github.com/emcarthur/phecode-HPO-map ).”— not found in the paper; verdict downgraded
A code-forge URL is given for the study's own code. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“R35GM127087”
A specific grant number (R35GM127087) is provided. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“HPO terms are from the release on April 14, 2022.”
The specific release date of the HPO ontology is named. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“Table 1. Phecode–HPO map is annotated by evidence type”
Variable definitions are provided inside the article in a table, not in a file shipped with the data. [majority verdict 'partial' (3/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.442
From this paper's citation signal
Citation Network Contribution
0.539
From 12 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 16 citers.
National Institutes of Health
Grant: R35GM127087
FWCI
1.70
Citation Percentile
0.8%
Citation Trend
Fields of Study
Keywords
Sustainable Development Goals