A highly contiguous genome assembly for the Yellow Warbler ( Setophaga petechia ) is a dataset published in Journal of Heredity (2024). On theSindex it has a DataRank of 0.165, placing it in the top 70.2% of the data-sharing corpus. It has been cited 2 times, with 1 citing works in its 1-hop citation network. Its calibrated FAIR score is 71/100.
Ranks in the top 70% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“Data generated for this study are available under NCBI BioProject PRJNA777222.”
The paper provides a persistent identifier from an NCBI scheme (BioProject accession).
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“Data generated for this study are available under NCBI BioProject PRJNA777222.”
The paper names NCBI (a recognised repository) as the holder of the data.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“Data generated for this study are available under NCBI BioProject PRJNA777222.”
The dataset identifier appears only in the body text (Data Availability section), not as a reference-list entry.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Data generated for this study are available under NCBI BioProject PRJNA777222.”
The data-availability statement points to a repository record (NCBI BioProject with accession).
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“Raw sequencing data for individual with voucher LACM:122168 (NCBI BioSamples SAMN29044059, SAMN29044060) are deposited in the NCBI Short Read Archive (SRA) under SRX16742538 for PacBio HiFi sequencing data, and SRX16742539 and SRX16742540 for the Omni-C Illumina sequencing data.”
The dataset's content is described in running prose (a sentence listing accessions) rather than an itemised inventory section, table, or list. [majority verdict 'partial' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“Data generated for this study are available under NCBI BioProject PRJNA777222.”
The data are deposited in NCBI with no stated precondition (embargo, registration, or application) for access.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“Data generated for this study are available under NCBI BioProject PRJNA777222.”
The paper states the data are available under an NCBI BioProject, but does not use an explicit access-level label from the standard vocabulary. [majority verdict 'partial' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are from a non-human species and no gatekeeper is mentioned; the criterion is not applicable.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“Data generated for this study are available under NCBI BioProject PRJNA777222.”
The paper states the data are available now but does not specify how long they will persist. [majority verdict 'partial' (3/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not name any file format for the released data (e.g., FASTA, FASTQ).
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
The paper does not name any data or metadata community standard from FAIRsharing or a controlled vocabulary; tools like BUSCO are not considered metadata standards. [majority verdict 'no' (3/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“We used the mitochondrial sequence of Kirtland's Warbler (NCBI: NC_051027.1) as the starting reference sequence.”— not found in the paper; verdict downgraded
The paper provides an NCBI accession for a third-party resource (Kirtland's Warbler mitochondrial genome). [downgraded to 'no' — no verifiable quote from the paper]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The paper does not state any licence for the data; the CC-BY-NC licence applies only to the article.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“GenBank accessions for both primary and alternate assemblies are GCA_024362935.1 and GCA_024372515.1; and for genome sequences JANCRA000000000 and JANCRB000000000 .”
The GenBank accessions include a version suffix (e.g., .1), providing a version token for the data. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“Assembly scripts and other data for the analyses presented can be found at the following GitHub repository: www.github.com/ccgproject/ccgp_assembly .”
The paper provides a GitHub repository URL, a machine-resolvable locator for the study's own code.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“UC Award ID RSI-19-690224”
The paper provides an award number (UC Award ID) from a named funder.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“It was sequenced at UC Davis DNA Technologies Core (Davis, CA) using two 8M SMRT cells, Sequel II sequencing chemistry 2.0, and 30-h movies each on a PacBio Sequel II sequencer.”
The paper names specific instruments and sequencing platforms (PacBio Sequel II, Illumina NovaSeq 6000) and kits used to produce the data. [majority verdict 'yes' (3/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
The paper does not mention any documentation object (e.g., README, data dictionary) that travels with the data. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.165
From this paper's citation signal
Citation Network Contribution
0
From 0 citing papers with measurable signal
This paper's DataRank is currently driven only by its base citation score. None of the citing papers had measurable citation signal.
Learn more about DataRank methodology →California Conservation Genomics Project, with funding provided to the University of California by the State of California, State Budget Act of 2019
Grant: RSI-19-690224
University of California
Grant: DGE-2034835
NIH HHS
Grant: S10 OD018174
NIH HHS
Grant: S10 OD010786
National Science Foundation
Grant: 2034835
Graduate Research Fellowship Program (GRFP)
National Institutes of Health
Grant: 1S10OD018174-01
Pacific Biosciences PacBio RS Single Molecule Real Time Sequencer
National Institutes of Health
Grant: 1S10OD010786-01
Acquisition of Covaris E220 and Sciclone G3 systems for high throughput sequencin
FWCI
0.37
Citation Percentile
0.6%
Citation Trend
Fields of Study
MeSH Terms
Keywords
Sustainable Development Goals