TCRD and Pharos 2021: mining the human proteome for disease biology is a dataset published in Nucleic Acids Research (2020). On theSindex it has a DataRank of 4.2, placing it in the top 5.3% of the data-sharing corpus. It has been cited 177 times, with 100 citing works in its 1-hop citation network. Its calibrated FAIR score is 54/100.
Ranks in the top 5% for downstream scientific impact
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“TCRD is an open source database that can be accessed at http://juniper.health.unm.edu/tcrd/”
The only identifier given is a URL (http://...), not a persistent identifier scheme.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“TCRD is an open source database that can be accessed at http://juniper.health.unm.edu/tcrd/”
The data are hosted on an institutional website (juniper.health.unm.edu), not a curated repository.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“TCRD is an open source database that can be accessed at http://juniper.health.unm.edu/tcrd/”
The dataset's URL appears only in the body text, not in the reference list.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“TCRD is an open source database that can be accessed at http://juniper.health.unm.edu/tcrd/ Pharos is an open source web platform that can be accessed at https://pharos.nih.gov/ The Pharos resources have been split into frontend and backend repositories. The front end code can be found on Github. https://github.com/ncats/pharos_frontend The backend GraphQL implementation code can be found on Github. https://github.com/ncats/pharos-graphql-server GraphQL resource documentation can be found on Pharos https://pharos.nih.gov/api”
The statement points to a URL for the database, not to a repository record with an accession or DOI.
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“Supplementary Table S2 contains a full breakdown of data types and fields collected.”
The paper references a supplementary table that itemises the dataset's contents. [majority verdict 'yes' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“TCRD is an open source database that can be accessed at http://juniper.health.unm.edu/tcrd/”
The text provides a direct URL with no stated precondition for access.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“TCRD is an open source database that can be accessed at http://juniper.health.unm.edu/tcrd/”
The paper labels the data as 'open source', which implies open access, and provides a URL for access.
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are not sensitive or human-subject; no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No statement about how long the data will be available or a retention period is given. [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format is named for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
“The Disease Ontology (DO) data were further extended”— not found in the paper; verdict downgraded
The paper names a community standard ontology (Disease Ontology) used in the data. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
No external data resource identifiers (accessions, DOIs) are given; only paper references.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No licence is stated for the data; the CC BY licence applies to the article only.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“the latest version uses TCRD version 6.7”
A version token (TCRD version 6.7) is explicitly stated.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“The front end code can be found on Github. https://github.com/ncats/pharos_frontend”
A machine-resolvable code repository URL is provided.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“National Institutes of Health (NIH) Common Fund [CA224370 to S.L.M., C.G.B., L.L.J., A.W., G.B., J.J.Y., T.I.O., U24TR002278 to D.V., A.K., J.H., A.W., S.C.S. and T.I.O.]”
Award numbers CA224370 and U24TR002278 are given. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“This was done using automated scripts.”
The method is described in generic terms without naming specific instruments or software. [majority verdict 'partial' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“Supplementary Table S2 contains a full breakdown of data types and fields collected.”
Field definitions are provided in a supplementary table within the article, not shipped with the data.
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.777
From this paper's citation signal
Citation Network Contribution
3.4
From 100 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 100 citers.
National Institutes of Health
Grant: CA224370
National Institutes of Health
Grant: U24TR002278
Novo Nordisk Foundation
Grant: NNF14CC0001
Novo Nordisk Foundation Center for Protein Research
Grant: PI Lars Juhl Jensen
NCI NIH HHS
Grant: U24 CA224370
National Institutes of Health
Grant: 1U24TR002278-01
Illuminating the Druggable Genome Resource Dissemination and Outreach Center (IDG-RDOC)
Novo Nordisk Foundation
Grant: unidentified
unidentified
National Institutes of Health
Grant: 5U24CA224370-06
Knowledge Management Center for Illuminating the Druggable Genome
Intramural Research Program, Division of Preclinical Innovation, NIH NCATS
Fields of Study
MeSH Terms
Keywords
Sustainable Development Goals