Analysing the yeast complexome—the Complex Portal rising to the challenge is a dataset published in Nucleic Acids Research (2021). On theSindex it has a DataRank of 0.434, placing it in the top 43% of the data-sharing corpus. It has been cited 17 times. Its calibrated FAIR score is 65/100.
Ranks in the top 43% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“10.5281/zenodo.4160609”
The paper provides a DOI for the Zenodo deposit of the study's analysis files, which is a persistent identifier scheme.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“Zenodo”
The paper names Zenodo as the repository where the analysis files are deposited.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“10.5281/zenodo.4160609”
The dataset identifier (DOI) appears only in the body text (Data Availability section) and not in the reference list.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The complete yeast complexome is available for download from www.ebi.ac.uk/complexportal/download , the CYC2008 and YHTP2008 data from http://wodaklab.org/cyc2008/downloads and all files listing complexes and co-complexes used as input for our analyses have been deposited in Zenodo (10.5281/zenodo.4160609)”
The data availability statement points to a repository record (Zenodo) with a DOI, fitting Colavizza category 3.
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“Table 1. Basic statistics about the five complex datasets”
Table 1 provides an itemized inventory of the dataset's size and composition, serving as a structural description. [majority verdict 'yes' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“all files listing complexes and co-complexes used as input for our analyses have been deposited in Zenodo (10.5281/zenodo.4160609)”
The route to the data is a Zenodo deposit with a DOI, and no precondition is stated.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“Data are freely available”
The paper explicitly labels the data as 'freely available' in the abstract and in the text, which is an access-level label. [majority verdict 'yes' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are not from human subjects or sensitive sources; no gatekeeper is named or required.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“all files listing complexes and co-complexes used as input for our analyses have been deposited in Zenodo (10.5281/zenodo.4160609)”
The data are deposited and available now, but no explicit retention period or persistence commitment is stated. [majority verdict 'partial' (2/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
“HUPO-PSI community standard PSI-MI XML3.0, MI-JSON and tab-delimited ComplexTab formats”— not found in the paper; verdict downgraded
The paper names open, community-standard formats (XML, JSON, tab-delimited) for the data, which are non-proprietary. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
“HUPO-PSI community standard PSI-MI XML3.0”
The paper uses HUPO-PSI standards, GO, and ECO, which are community data/metadata standards. [majority verdict 'yes' (3/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
No persistent identifier (DOI, accession, RRID) is given for any external resource; only URLs and bare names are used. [majority verdict 'no' (3/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No license for the data is stated; the CC-BY license applies to the article only.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“release 228”
The paper states the Complex Portal release version (release 228) for the dataset, which is a version token.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
No code locator is provided for the study's own analysis code.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“Wellcome Trust [212925/Z/18/Z]”— not found in the paper; verdict downgraded
Multiple award numbers are provided alongside named funders. [downgraded to 'partial' — no verifiable quote from the paper]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“The data for the yeast complexome were derived from detailed literature searches and collated in collaboration with curators based at UniProt and SGD.”
The production method is described in generic terms without naming specific instruments, kits, or software versions. [majority verdict 'partial' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“Table 1. Basic statistics about the five complex datasets”
Variable-level definitions (e.g., number of proteins, complexes, co-complexes) are provided inside the article via Table 1, but no separate documentation object accompanies the data. [majority verdict 'partial' (3/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.434
From this paper's citation signal
Citation Network Contribution
0
Citation network not refreshed for this result
This paper's DataRank is currently driven only by its base citation score. Citation network data was not refreshed for this result.
Learn more about DataRank methodology →Open Targets
Grant: OTAR-044
Open Targets
Grant: OTAR02–048
Wellcome Trust
Grant: 212925/Z/18/Z
National Institutes of Health
Grant: U24HG007822
National Institutes of Health
Grant: RYC-2017–22959
National Human Genome Research Institute
Grant: U41HG001315
National Human Genome Research Institute
Grant: U41HG002273
National Human Genome Research Institute
Grant: U41HG02223–17S1
NHGRI NIH HHS
Grant: U41 HG002223
National Institutes of Health
Grant: 5U24HG007822-12
UniProt: A Protein Sequence and Function Resource for Biomedical Science
National Institutes of Health
Grant: 4U41HG002273-16
Gene Ontology Consortium
National Institutes of Health
Grant: 5U41HG001315-23
Genomic Resource for the Yeast Saccharomyces
Wellcome Trust
Grant: 212925
INVAR – assigning function to orphan amino-acid variants
National Institutes of Health
Grant: 3U41HG002223-17S1
WormBase: a core data resource for C. elegans and other nematodes
EMBL
National Institute of Diabetes and Digestive and Kidney Diseases
National Cancer Institute
National Eye Institute
National Institute of Allergy and Infectious Diseases
National Institute on Aging
National Institute of General Medical Sciences
Wellcome Trust
National Heart, Lung, and Blood Institute
National Institute of Mental Health
FWCI
0.00
Citation Percentile
0.0%
Fields of Study
MeSH Terms
Keywords