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The UCSC Genome Browser database: 2022 update

Nucleic Acids Research(2021)10.1093/nar/gkab959Source: DataRank Database

The UCSC Genome Browser database: 2022 update is a dataset published in Nucleic Acids Research (2021). On theSindex it has a DataRank of 5.4, placing it in the top 3.8% of the data-sharing corpus. It has been cited 309 times, with 100 citing works in its 1-hop citation network.

Top 4%percentile

5.4DataRank

Ranks in the top 4% for downstream scientific impact

Data paper Open Access309 citations · 100 citing works in its network

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DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (23 grants)Impact (FWCI 22.57)OA: goldTopics (59)IDs (PubMed, PMC, OpenAlex)SDGs (2)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (1/3)

Dataset classification

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DataRank Breakdown

Base Score 16%Citation Network 84%

Base Score Contribution

0.860

From this paper's citation signal

Citation Network Contribution

4.6

From 100 citing papers with measurable signal

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Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 100 citers.

Treenome Browser: co-visualization of enormous phylogenies and millions of genomes
Bioinformatics202212 citations5 referencesContributes 0.513
WashU Epigenome Browser update 2022
Nucleic Acids Research2022169 citations25 referencesContributes 0.205
CRISPRon/off: CRISPR/Cas9 on- and off-target gRNA design
Bioinformatics202246 citations20 referencesContributes 0.193
Genenames.org: the HGNC resources in 2023
Nucleic Acids Research2022544 citations39 referencesContributes 0.162
Optimized single-cell RNA sequencing protocol to study early genome activation in mammalian preimplantation development
STAR Protocols202312 citations18 referencesContributes 0.142

Authors (25)

Galt P Barber,Anna Benet‐Pagès ORCID,Jonathan D. Casper ORCID,Hiram Clawson ORCID,Mark Diekhans ORCID

Live enrichment

PubMed:34718705 PMC:PMC8728131 OpenAlex:https://openalex.org/W3208459100

National Human Genome Research Institute

Grant: 5U41HG002371

National Human Genome Research Institute

Grant: 5U41HG007234

National Human Genome Research Institute

Grant: 5R01HG010329

National Institutes of Health

Grant: 5U01HG010971

U.S. Department of Health and Human Services

Grant: 1U41HG010972

Howard Hughes Medical Institute

Grant: 090100

Silicon Valley Community Foundation

Grant: 2017-171531(5022)

Center for Information Technology Research in the Interest of Society

Grant: 2020-0000000026

University of California Office of the President Emergency

Grant: R00RG2456

California Department of Public Health

Grant: 20-11088

California HIV/AIDS Research Program

Grant: R01RG3764

NHGRI NIH HHS

Grant: U01 HG010971

NIMH NIH HHS

Grant: RF1 MH132662

NHGRI NIH HHS

Grant: U41 HG010972

NHGRI NIH HHS

Grant: R01 HG010329

NHGRI NIH HHS

Grant: U24 HG002371

NHGRI NIH HHS

Grant: U41 HG002371

NHGRI NIH HHS

Grant: U41 HG007234

National Institutes of Health

Grant: 5U01HG010971-05

Center for Human Reference Genome Diversity

National Institutes of Health

Grant: 5U41HG007234-08

GENCODE: comprehensive genome annotation for human and mouse

National Institutes of Health

Grant: 5U41HG002371-21

The UCSC Genome Browser

National Institutes of Health

Grant: 5U41HG010972-02

The WashU-UCSC-EBI Human Genome Reference Center

National Institutes of Health

Grant: 1R01HG010329-01

Evolution of new regulatory networks via genetic arms races between KRAB zinc finger proteins and retrotransposons

FWCI

22.57

Citation Percentile

1.0%

Citation Trend

2021

2022

2023

2024

2025

2026

goldLicense: cc-by

journalhttps://academic.oup.com/nar/article-pdf/50/D1/D1115/42058497/gkab959.pdf

publisherhttps://academic.oup.com/nar/article-pdf/50/D1/D1115/42058497/gkab959.pdf

journalhttps://doi.org/10.1093/nar/gkab959

repositoryhttps://pubmed.ncbi.nlm.nih.gov/34718705

repositoryhttps://escholarship.org/uc/item/88n6j9cj

Fields of Study

Genomics and Phylogenetic StudiesGenomics and Rare DiseasesCRISPR and Genetic Engineering0206 medical engineering02 engineering and technology

MeSH Terms

Exome SequencingSARS-CoV-2AnimalsHumansPhylogenyUser-Computer InterfaceGenome, HumanPolymerase Chain ReactionDatabases, GeneticWeb Browser

Keywords

Genome browserDECIPHERGenomeContext (archaeology)BiologySoftwareUsabilityVisualizationGenomicsWorld Wide WebComputational biologyComputer scienceGeneticsGeneData miningHuman–computer interactionCoronavirusesBioinformatics and Computational Biology610BioengineeringWeb BrowserPolymerase Chain ReactionDatabasesUser-Computer InterfaceGeneticInformation and Computing SciencesDatabases, GeneticExome SequencingDatabase IssueAnimalsHumansPhylogenyCancerGenome, HumanSARS-CoV-2Human GenomeBiological Sciences004Environmental sciencesNetworking and Information Technology R&D (NITRD)Chemical sciencesBiotechnologyHumanDevelopmental Biology

Sustainable Development Goals

SDG 3: 3. Good healthSDG 0: Partnerships for the goals