Ribo-uORF: a comprehensive data resource of upstream open reading frames (uORFs) based on ribosome profiling is a dataset published in Nucleic Acids Research (2022). On theSindex it has a DataRank of 1.3, placing it in the top 16.4% of the data-sharing corpus. It has been cited 33 times, with 31 citing works in its 1-hop citation network. Its calibrated FAIR score is 50/100.
Ranks in the top 16% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“Ribo-uORF is freely accessible at http://rnainformatics.org.cn/RiboUORF and http://rnabioinfor.tch.harvard.edu/RiboUORF”
The identifier given is a URL, not a persistent identifier scheme (DOI, Handle, etc.). [majority verdict 'partial' (4/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“Ribo-uORF is freely accessible at http://rnainformatics.org.cn/RiboUORF and http://rnabioinfor.tch.harvard.edu/RiboUORF”
The holder is an institutional website, not a named repository from re3data or FAIRsharing. [majority verdict 'partial' (4/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“Ribo-uORF is freely accessible at http://rnainformatics.org.cn/RiboUORF and http://rnabioinfor.tch.harvard.edu/RiboUORF”
The dataset identifier (URL) appears only in the body text, not as a reference-list entry. [majority verdict 'partial' (4/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Ribo-uORF is freely accessible at http://rnainformatics.org.cn/RiboUORF and http://rnabioinfor.tch.harvard.edu/RiboUORF”
The statement points to a URL, not a repository record with an accession or DOI, so it is category 2 (link to archived data, but not a repository record). [majority verdict 'partial' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“Ribo-uORF includes 501 554 actively translated uORFs and 107 914 upstream translation initiation sites (uTIS), which were identified from 1495 Ribo-seq and 77 quantitative translation initiation sequencing (QTI-seq) datasets, respectively.”
The dataset content is described in running prose rather than an itemised inventory (section, table, or list).
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“Ribo-uORF is freely accessible at http://rnainformatics.org.cn/RiboUORF and http://rnabioinfor.tch.harvard.edu/RiboUORF”
The sentence states the data are freely accessible with no precondition. [majority verdict 'yes' (4/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“Ribo-uORF is freely accessible at http://rnainformatics.org.cn/RiboUORF and http://rnabioinfor.tch.harvard.edu/RiboUORF”
The paper explicitly labels the data as 'freely accessible', which is a natural-language equivalent of 'open access'. [majority verdict 'yes' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
“Ribo-uORF is freely accessible at http://rnainformatics.org.cn/RiboUORF and http://rnabioinfor.tch.harvard.edu/RiboUORF”
The data are not sensitive and no gatekeeper is mentioned; the statement simply points to open access.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“Ribo-uORF is freely accessible at http://rnainformatics.org.cn/RiboUORF and http://rnabioinfor.tch.harvard.edu/RiboUORF .”
The paper states that the data are freely accessible now, but does not mention how long they will persist, only the timing of availability. [majority verdict 'partial' (3/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format is named for the released data. [majority verdict 'no' (4/5 passes agreed)]
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard (e.g., MIAME, MIxS, an ontology) is named as applied to the data. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“COSMIC v93 database”
The paper provides identifiers (e.g., COSMIC v93) for external resources used. [majority verdict 'yes' (3/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No reuse license is stated for the data; the Creative Commons license applies only to the article.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is given to identify a snapshot of the data.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“Source codes for modified RibORF and related programs are available at https://github.com/rnainformatics/ribo-uORF”
A machine-resolvable code repository URL is provided.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“National Natural Science Foundation of China [32270698]”
Award numbers are given for each named funder. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Cutadapt v3.4 and FASTX-Toolkit v0.0.13 were used for adapter trimming and quality control of raw reads.”— not found in the paper; verdict downgraded
The paper names specific tools and versions used to produce the data. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No separate documentation object (README, codebook) is said to accompany the data; the description is inside the article. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.529
From this paper's citation signal
Citation Network Contribution
0.727
From 27 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 31 citers.
National Natural Science Foundation of China
Grant: 32270698
Special Foundation for Introduction of Scientific Talents of GDAAS
Grant: R2021YJ-XD001
Project of Guangdong Key Laboratory of New Technology in Rice Breeding
Grant: 2020B1212060047
NIH
Grant: R35CA232115
NIH
Grant: R01CA233671
National Institutes of Health
Grant: 5R35CA232115-04
Role of the Epitranscriptome in Cancer
National Institutes of Health
Grant: 5R01CA233671-05
Role of METTL3 and the m6A Epitranscriptome in cancer
FWCI
2.28
Citation Percentile
0.9%
Citation Trend
Fields of Study
MeSH Terms
Keywords