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Combining TSS-MPRA and sensitive TSS profile dissimilarity scoring to study the sequence determinants of transcription initiation

Nucleic Acids Research(2023)10.1093/nar/gkad562Source: DataRank Database

Combining TSS-MPRA and sensitive TSS profile dissimilarity scoring to study the sequence determinants of transcription initiation is a research paper published in Nucleic Acids Research (2023). On theSindex it has a DataRank of 0. It has been cited 7 times.

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Enrichment:Funding (19 grants)Impact (FWCI 0.66)OA: goldTopics (41)IDs (PubMed, PMC, OpenAlex)Annotations (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

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Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (7)

Sascha H. Duttke ORCID,Yixin Zhu ORCID,Camila De Arruda Saldanha,Nicholas Downes ORCID,Christopher Benner ORCID

Live enrichment

PubMed:37403796 PMC:PMC10450201 OpenAlex:https://openalex.org/W4383186780

NIH

Grant: R00GM135515

NIH

Grant: R01GM134366

NIH

Grant: U01DA051972

NIH

Grant: U01AI150748

NIH

Grant: R21DA056177

NIH

Grant: R01GM129523

NIH

Grant: P30DK063491

NIH

Grant: P30DK120515

NHGRI NIH HHS

Grant: F31 HG011823

National Institutes of Health

Grant: 5R01GM134366-04

Uncovering how transcription and chromatin 3D structure impact one another during cellular activation

National Institutes of Health

Grant: 5R01GM129523-02

How transcription disrupts genome 3D organization

National Institutes of Health

Grant: 5P30DK120515-04

San Diego Digestive Diseases Research Center

National Institutes of Health

Grant: 1U01AI150748-01

Dynamic regulatory network models of human response to influenza virus

National Institutes of Health

Grant: 1F31HG011823-01A1

Deciphering the contribution of enhancer transcription to enhancer function

National Institutes of Health

Grant: 5R21DA056177-02

Decoding regulatory functions of genetic variants associated with substance use disorders

National Institutes of Health

Grant: 3P30DK063491-04S1

Diabetes Endocrinology Research Center

National Institutes of Health

Grant: 5U01DA051972-02

Decoding the grammar of transcriptional enhancers regulating different stages of opioid use disorder

National Institutes of Health

Grant: 5R00GM135515-04

Exploiting Natural Genetic and Organismic Variation to Identify the DNA Motifs Regulating Transcription

UC San Diego

FWCI

0.66

Citation Percentile

0.6%

Citation Trend

2023

2024

2025

2026

goldLicense: cc-by

journalhttps://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad562/50819888/gkad562.pdf

publisherhttps://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad562/50819888/gkad562.pdf

publisherhttps://academic.oup.com/nar/article-pdf/51/15/e80/51232338/gkad562.pdf

journalhttps://doi.org/10.1093/nar/gkad562

repositoryhttps://pubmed.ncbi.nlm.nih.gov/37403796

Fields of Study

Genomics and Chromatin DynamicsRNA Research and SplicingGene expression and cancer classification0206 medical engineering02 engineering and technology

MeSH Terms

Gene Expression RegulationPromoter Regions, GeneticRegulatory Sequences, Nucleic AcidTranscription FactorsTranscription Initiation SiteHigh-Throughput Nucleotide Sequencing

Keywords

BiologyReplicateComputational biologyPromoterGeneticsTranscription factorTranscription (linguistics)Reporter geneGeneGene expressionStatisticsMathematicsNucleic AcidBioinformatics and Computational Biology610High-Throughput Nucleotide SequencingBiological SciencesRegulatory Sequences, Nucleic AcidPromoter RegionsEnvironmental sciencesGeneticChemical sciencesGene Expression RegulationInformation and Computing SciencesMethods OnlineTranscription Initiation SitePromoter Regions, GeneticRegulatory SequencesDevelopmental BiologyTranscription Factors

Combining TSS-MPRA and sensitive TSS profile dissimilarity scoring to study the sequence determinants of transcription initiation

FAIR Checklist

Authors (7)

Funding (19 grants)

Impact

Open Access

Topics

Annotations (Europe PMC)