Comprehensive genome annotation of the model ciliate Tetrahymena thermophila by in-depth epigenetic and transcriptomic profiling is a dataset published in Nucleic Acids Research (2024). On theSindex it has a DataRank of 0.599, placing it in the top 33% of the data-sharing corpus. It has been cited 29 times, with 25 citing works in its 1-hop citation network. Its calibrated FAIR score is 71/100.
Ranks in the top 33% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“Data and code are also deposited in Zenodo and the doi is https://doi.org/10.5281/zenodo.14048241 .”
The paper gives a DOI (10.5281/zenodo.14048241) for the dataset, which is a persistent identifier scheme.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The polished genome, gene annotation (including genes, AS isoforms and natural antisense transcripts), CDS sequences and protein sequences have all been uploaded to NCBI (PRJNA1048844) and GitHub ( https://github.com/yefei521/GAET/releases/tag/V2024.2 ).”
The paper names NCBI, a proper repository, as the holder of the data.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The polished genome, gene annotation (including genes, AS isoforms and natural antisense transcripts), CDS sequences and protein sequences have all been uploaded to NCBI (PRJNA1048844) and GitHub ( https://github.com/yefei521/GAET/releases/tag/V2024.2 ).”
The dataset identifier appears only in the body text (data availability section), not in the reference list.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The polished genome, gene annotation (including genes, AS isoforms and natural antisense transcripts), CDS sequences and protein sequences have all been uploaded to NCBI (PRJNA1048844) and GitHub ( https://github.com/yefei521/GAET/releases/tag/V2024.2 ).”
The data availability statement points to archived data in public repositories with accessions (Colavizza category 3). [majority verdict 'yes' (3/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The polished genome, gene annotation (including genes, AS isoforms and natural antisense transcripts), CDS sequences and protein sequences have all been uploaded to NCBI (PRJNA1048844) and GitHub”
The dataset's content is described in running prose, not in an itemised inventory. [majority verdict 'partial' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The polished genome, gene annotation (including genes, AS isoforms and natural antisense transcripts), CDS sequences and protein sequences have all been uploaded to NCBI (PRJNA1048844) and GitHub ( https://github.com/yefei521/GAET/releases/tag/V2024.2 ).”
The data are deposited in public repositories that are freely accessible without any stated precondition.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The polished genome, gene annotation (including genes, AS isoforms and natural antisense transcripts), CDS sequences and protein sequences have all been uploaded to NCBI (PRJNA1048844) and GitHub ( https://github.com/yefei521/GAET/releases/tag/V2024.2 ).”
The paper describes the action of depositing data in public repositories without labeling the access level. [majority verdict 'partial' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are from a model ciliate, not human subjects, so no gatekeeper is required or named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
The paper does not state how long the data will be available or mention any retention policy. [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not name any file format for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard (e.g., MIAME, BIDS) is named as applied to the data. [majority verdict 'no' (2/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“Our SMRT-seq 6mA data is available at the NCBI database (BioProject accession number: PRJNA932808)”
The paper provides an identifier for a resource (previous 6mA data) other than the study's own dataset. [majority verdict 'yes' (4/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No reuse licence is named for the data; the article's CC BY-NC licence applies only to the paper.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“GitHub ( https://github.com/yefei521/GAET/releases/tag/V2024.2 )”
A version token (V2024.2) is given for the code release. [majority verdict 'yes' (3/5 passes agreed)]
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“Scripts for data generation and analysis are available in github: https://github.com/yefei521/GAET .”
The paper provides a machine-resolvable URL to the code repository on GitHub.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“National Natural Science Foundation of China (32125006, 32070437, 32030015, and 32270512)”
The paper provides specific grant numbers for the funding sources.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“150 bp paired-end sequencing was performed on the Illumina NovaSeq 6000 platform”
Specific instruments and software are named for data production. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object such as a README or codebook is named as accompanying the data.
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.510
From this paper's citation signal
Citation Network Contribution
0.0892
From 8 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 25 citers.
National Natural Science Foundation of China
Grant: 32125006
National Natural Science Foundation of China
Grant: 32070437
National Natural Science Foundation of China
Grant: 32030015
National Natural Science Foundation of China
Grant: 32270512
Science & Technology Innovation Project of Laoshan Laboratory
Grant: LSKJ202203203
Natural Science Foundation of Jiangsu Province
Grant: BK20220268
US National Institutes of Health
Grant: P40OD010964
Shandong University
Shandong Provincial Higher Education Institutions
King Saud University
Shandong University
King Saud University
Shandong Provincial Higher Education Institutions
FWCI
4.85
Citation Percentile
1.0%
Citation Trend
Fields of Study
MeSH Terms
Keywords