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Predicting gene expression from histone marks using chromatin deep learning models depends on histone mark function, regulatory distance and cellular states

Nucleic Acids Research(2025)10.1093/nar/gkae1212Source: DataRank Database

Predicting gene expression from histone marks using chromatin deep learning models depends on histone mark function, regulatory distance and cellular states is a research paper published in Nucleic Acids Research (2025). On theSindex it has a DataRank of 0.360. It has been cited 10 times.

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0.360DataRank · unranked

Scored on demand from live citation data

10 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (7 grants)Impact (FWCI 1.12)OA: goldTopics (34)IDs (PubMed, PMC, OpenAlex)Annotations (2)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (0/2)

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 100%Citation Network 0%

Base Score Contribution

0.360

From this paper's citation signal

Citation Network Contribution

Citation network not refreshed for this result

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Authors (5)

Aydan Askarova,Boris Lenhard ORCID,Nathan G Skene,Sarah J Marzi,Alan E Murphy ORCID

Live enrichment

PubMed:39660643 PMC:PMC11879020 OpenAlex:https://openalex.org/W4405296620

UK Dementia Research Institute

Grant: UKDRI-5008

UK Dementia Research Institute

Grant: UKDRI-6009

UKRI Future Leaders Fellowship

Grant: MR/T04327X/1

Medical Research Council

Edmond and Lily Safra Early Career Fellowship Program

Medical Research Council

FWCI

1.12

Citation Percentile

0.8%

Citation Trend

2025

2026

goldLicense: cc-by

journalhttps://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkae1212/61033843/gkae1212.pdf

publisherhttps://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkae1212/61033843/gkae1212.pdf

publisherhttps://academic.oup.com/nar/article-pdf/53/4/gkae1212/61196232/gkae1212.pdf

journalhttps://doi.org/10.1093/nar/gkae1212

repositoryhttps://pubmed.ncbi.nlm.nih.gov/39660643

Fields of Study

Genomics and Chromatin DynamicsEpigenetics and DNA MethylationRNA Research and SplicingDeep LearningHistone CodeChromatinHumansHistonesGene Expression RegulationPromoter Regions, GeneticTranscription, Genetic

MeSH Terms

Deep LearningChromatinGene Expression RegulationHistonesHumansPromoter Regions, GeneticTranscription, GeneticHistone Code

Keywords

BiologyHistoneChromatinEpigenomicsHistone codeComputational biologyGeneticsRegulation of gene expressionHistone H2AHistone H1In silicoGene expressionGeneNucleosomeDNA methylation

Predicting gene expression from histone marks using chromatin deep learning models depends on histone mark function, regulatory distance and cellular states

FAIR Checklist

DataRank Breakdown

Authors (5)

Funding (7 grants)

Impact

Open Access

Topics

Annotations (Europe PMC)