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Structure of the E. coli nucleoid-associated protein YejK reveals a novel DNA binding clamp

Nucleic Acids Research(2024)10.1093/nar/gkae459Source: DataRank Database

Structure of the E. coli nucleoid-associated protein YejK reveals a novel DNA binding clamp is a research paper published in Nucleic Acids Research (2024). On theSindex it has a DataRank of 0.364. It has been cited 7 times, with 5 citing works in its 1-hop citation network.

N/A

0.364DataRank · unranked

Scored on demand from live citation data

Deposits data Open Access7 citations · 5 citing works in its network

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Data availability

Repositories this paper deposited data in (declared in PubMed).

PDB9BE2

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (3 grants)OA: goldTopics (16)IDs (PubMed)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 86%Citation Network 14%

Base Score Contribution

0.312

From this paper's citation signal

Citation Network Contribution

0.0519

From 3 citing papers with measurable signal

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Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 5 citers.

The molecular basis for DNA-binding by competence T4P is distinct in a representative Gram-positive and Gram-negative species
PLoS Pathogens20256 citations54 referencesContributes 0.036
The molecular basis for DNA-binding by competence T4P is distinct in Gram-positive and Gram-negative species
bioRxiv (Cold Spring Harbor Laboratory)20251 citations53 referencesContributes 0.013
Untangling bacterial DNA topoisomerases functions
Biochemical Society Transactions20243 citations116 referencesContributes 0.012
Argininosuccinate lyase from Escherichia coli as a novel DNA-binding protein
Biochemical and Biophysical Research Communications20260 citations37 referencesContributes 0.000
Nucleoid-associated proteins sense phage-induced genome damage to elicit abortive infection
bioRxiv (Cold Spring Harbor Laboratory)20260 citations51 referencesContributes 0.000

Authors (3)

Rajiv Ranjan Singh ORCID,Raul Salinas ORCID,Maria A. Schumacher ORCID

Live enrichment

PubMed:38832628

National Institutes of Health

Grant: 2P30GM124169-06

ALS Efficiently Networking Advanced Beam Line Experiments (ALS-ENABLE)

National Institutes of Health

Grant: 1R35GM130290-01

Deciphering fundamental biological processes involving protein-nucleic acid interactions at the molecular level

National Institutes of Health

Grant: 3P30CA016086-42S2

Cancer Center Support Grant

goldLicense: CC BY NC

https://doi.org/10.1093/nar/gkae459

https://pubmed.ncbi.nlm.nih.gov/38832628

http://dx.doi.org/10.1093/nar/gkae459

Fields of Study

0301 basic medicine0303 health sciences03 medical and health sciences

Keywords

DNA, BacterialModels, MolecularBinding SitesEscherichia coli ProteinsDNACrystallography, X-RayDNA-Binding ProteinsProtein DomainsStructural BiologyEscherichia coliAmino Acid SequenceProtein MultimerizationProtein Binding