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Structural insights into RNA cleavage by a novel family of bacterial RNases

Nucleic Acids Research(2024)10.1093/nar/gkae717Source: DataRank Database

Structural insights into RNA cleavage by a novel family of bacterial RNases is a research paper published in Nucleic Acids Research (2024). On theSindex it has a DataRank of 0.268. It has been cited 4 times, with 3 citing works in its 1-hop citation network.

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0.268DataRank · unranked

Scored on demand from live citation data

Deposits data Open Access4 citations · 3 citing works in its network

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Data availability

Repositories this paper deposited data in (declared in PubMed).

PDB8VER 8VES

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (17 grants)OA: goldTopics (27)IDs (PubMed, PMC)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 90%Citation Network 10%

Base Score Contribution

0.241

From this paper's citation signal

Citation Network Contribution

0.0270

From 2 citing papers with measurable signal

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Top 3 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 3 citers.

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Research in Microbiology20251 citations71 referencesContributes 0.010
Substrate induced activation in the conserved ribonuclease YicC
bioRxiv (Cold Spring Harbor Laboratory)20260 citations37 referencesContributes 0.000

Authors (9)

Shakti Ingle ORCID,Sarah A. Barnes,Heather R. Dahlin,Susmita Khamrui,Yufei Xiang ORCID

Live enrichment

PubMed:39180400 PMC:PMC11417398

National Institute of General Medical Sciences

Grant: R01GM147211

National Institute of General Medical Sciences

Grant: R35GM124838

National Institute of General Medical Sciences

Grant: R35GM137905

NCATS NIH HHS

Grant: UL1 TR004419

NIH HHS

Grant: S10 OD026880

NIGMS NIH HHS

Grant: P30 GM133893

NIH HHS

Grant: S10 OD030463

NIGMS NIH HHS

Grant: R01 GM129325

National Institutes of Health

Grant: 1R01GM147211-01A1

YloC, a new ribonuclease of Bacillus subtilis

National Institutes of Health

Grant: 5P30GM133893-04

The Center for Biomolecular Structure at NSLS-II

National Institutes of Health

Grant: 5UL1TR004419-03

Conduits: Mount Sinai Health System Translational Science Hub

National Institutes of Health

Grant: 5R35GM137905-04

Development of the next generation antibody technologies and their applications

National Institutes of Health

Grant: 5R01GM129325-08

ChimeraX -- Next Generation Visualization and Analysis Software for Multiscale Modeling

National Institutes of Health

Grant: 1S10OD030463-01

COVID and Translational Science supercomputer (CATS)

National Institutes of Health

Grant: 1S10OD026880-01

Big Omics Data Engine 2 Supercomputer

National Institutes of Health

Grant: 5R35GM124838-04

Chemical and structural tools to study energy homeostasis pathways in cancer and diabetes

National Institutes of Health

goldLicense: cc-by-nc

publisherhttps://doi.org/10.1093/nar/gkae717

publisherhttps://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkae717/59209389/gkae717.pdf

repositoryhttps://pmc.ncbi.nlm.nih.gov/articles/PMC11417398/pdf/gkae717.pdf

Europe_PMChttps://europepmc.org/articles/PMC11417398

Europe_PMChttps://europepmc.org/articles/PMC11417398?pdf=render

Fields of Study

0301 basic medicine0303 health sciences03 medical and health sciences

MeSH Terms

Escherichia coliRibonucleasesEscherichia coli ProteinsRNARNA, BacterialCrystallography, X-RayNucleic Acid ConformationProtein ConformationProtein BindingModels, MolecularRNA Cleavage

Keywords

Models, MolecularRNA CleavageProtein ConformationEscherichia coli ProteinsCrystallography, X-RayArticleRNA, BacterialRibonucleasesStructural BiologyEscherichia coliRNANucleic Acid ConformationProtein Binding