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R2DT: a comprehensive platform for visualizing RNA secondary structure

Nucleic Acids Research(2025)10.1093/nar/gkaf032Source: DataRank Database

R2DT: a comprehensive platform for visualizing RNA secondary structure is a research paper published in Nucleic Acids Research (2025). On theSindex it has a DataRank of 0. It has been cited 23 times.

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0DataRank · unranked

Scored on demand from live citation data

Open Access23 citations

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Linked data & code

gen rfam rnacentral pdb

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (24 grants)Impact (FWCI 9.75)OA: goldTopics (36)IDs (PubMed, PMC, OpenAlex)Annotations (4)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (22)

Caeden D. Meade ORCID,Loren Dean Williams ORCID,Anton S. Petrov ORCID,Philip Z. Johnson ORCID,Anne E. Simon ORCID

Live enrichment

PubMed:39921562 PMC:PMC11806352 OpenAlex:https://openalex.org/W4407295698

Grant: 218303/Z/19/Z

National Science Foundation

Grant: 312990-00001

Grant: 218302/Z/19/Z

NSF

Grant: 2022065

URoL: Epigenetics 2: Profiling and functional dissection of the epitranscriptome in archaeal extremophiles

NIH

Grant: R01HG006753

Wellcome Trust

Grant: 223739

PDBe-KB - enhancing impact of structural knowledgebase in basic and translational research with focus on Pathogenic Mutations

Grant: 221327/Z/20/Z

Grant: 223739/Z/21/Z

United States Department of Agriculture

Grant: 308291-00001

National Science Foundation Graduate Research Fellowship Award

Grant: DGE-1840340

NIH

Grant: R01GM085328

U.S. National Library of Medicine

Grant: 20 894

NASA

Grant: 80NSSC24K0344

National Science Foundation

Grant: 1840340

Graduate Research Fellowship Program (GRFP)

Wellcome Trust

Grant: 221327

3D-FunSites - a virtual encyclopaedia of protein functional sites for assessing variant impacts and drug repurposing

National Institutes of Health

Grant: 2R01HG006753-04A1

A Unified Atlas of Dynamic tRNA Function

Wellcome Trust

Grant: 218303

PDBe - Facilitating Open Science in Structural Biology

Wellcome Trust

Grant: 218302

A comprehensive platform for the functional annotation of non-coding RNA genes and gene families

National Institutes of Health

Grant: 5R01GM085328-03

RNA 3D Motif Search, Atlas, and Prediction from Sequence

EMBL

Ministry of Education

National Library of Medicine

NLM NIH HHS

e-INFRA CZ project

FWCI

9.75

Citation Percentile

1.0%

Citation Trend

2025

2026

goldLicense: cc-by

journalhttps://doi.org/10.1093/nar/gkaf032

publisherhttps://doi.org/10.1093/nar/gkaf032

repositoryhttps://pubmed.ncbi.nlm.nih.gov/39921562

repositoryhttps://pubmed.ncbi.nlm.nih.gov/39970282

repositoryhttps://escholarship.org/uc/item/8dw4c9g1

Fields of Study

RNA and protein synthesis mechanismsGenomics and Phylogenetic StudiesRNA modifications and cancer0206 medical engineering02 engineering and technology

MeSH Terms

Computer GraphicsNucleic Acid ConformationRNASoftwarePolymorphism, Single NucleotideRNA Folding

Keywords

VisualizationTemplateRNABiologyComputer scienceSoftwareFunction (biology)Computational biologyFolding (DSP implementation)Nucleic acid structureBioinformaticsData miningGeneticsProgramming languageEngineeringGeneRNA Folding000Single NucleotidePolymorphism, Single NucleotideArticle004Computer GraphicsNucleic Acid ConformationPolymorphism

Sustainable Development Goals

SDG 0: Quality Education