Genomic characterization of Bordetella pertussis in South Africa, 2015–2019 is a dataset published in Microbial Genomics (2023). On theSindex it has a DataRank of 0.364, placing it in the top 49.1% of the data-sharing corpus. It has been cited 4 times, with 4 citing works in its 1-hop citation network. Its calibrated FAIR score is 63/100.
Ranks in the top 49% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“PRJNA929342”
The dataset is identified by the BioProject accession PRJNA929342, which is a persistent identifier scheme.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The genome sequences for 32 South Africa B. pertussis isolates are available on NCBI, organized under BioProject accession number PRJNA929342.”
NCBI is a named data repository that issues accessions and commits to retention. [majority verdict 'yes' (3/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The genome sequences for 32 South Africa B. pertussis isolates are available on NCBI, organized under BioProject accession number PRJNA929342.”
The dataset identifier appears only in the body text (data availability statement), not in the reference list.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The genome sequences for 32 South Africa B. pertussis isolates are available on NCBI, organized under BioProject accession number PRJNA929342.”
The statement points to a repository record (NCBI BioProject accession number PRJNA929342).
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The genome sequences for 32 South Africa B. pertussis isolates are available on NCBI, organized under BioProject accession number PRJNA929342.”
The data's content and extent are stated in running prose ('genome sequences for 32 South Africa B. pertussis isolates'), but no itemised inventory (section, table, or list) is provided. [majority verdict 'partial' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The genome sequences for 32 South Africa B. pertussis isolates are available on NCBI, organized under BioProject accession number PRJNA929342.”
The text gives a route to the data with no stated precondition; the data are available on NCBI.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The genome sequences for 32 South Africa B. pertussis isolates are available on NCBI, organized under BioProject accession number PRJNA929342.”
The paper describes the action of availability on NCBI but does not label the access level with an explicit term such as 'open access' or 'publicly available'.
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
No gatekeeper is named for the data; the data are deposited in a public repository without any access restrictions.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No sentence in the paper addresses when the data become available or how long they persist. [majority verdict 'no' (3/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not name any file format for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard (e.g., MIAME, MINSEQE, MIxS) is named; only a manuscript reporting guideline is absent. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“The reference genome used was B. pertussis E476 (vaccine strain: Tohama I – accession number: CP010964).”— not found in the paper; verdict downgraded
The paper includes an identifier (CP010964) for a reference genome that is not its own dataset. [downgraded to 'no' — no verifiable quote from the paper]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No licence for the data is named; the article's CC-BY licence does not cover the data.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
Neither a version token nor a date is provided to pin the data snapshot.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“All supporting data, code and protocols have been provided within the article or through supplementary data files.”
The code is stated to be in the supplementary material, which is not an authoritative versioned repository. [majority verdict 'partial' (3/5 passes agreed)]
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“This work was supported by the National Institute for Communicable Diseases of the National Health Laboratory Service, the US Centers for Disease Control and Prevention (cooperative agreement number 5U51IP000155) and Sanofi Pasteur (cooperative agreement number PER00059). This work was supported, in part, by a Fogarty International Center Global Infectious Disease research training grant, National Institutes of Health, to the University of Pittsburgh and National Institute for Communicable Diseases (D43TW011255).”
The paper includes award/grant numbers for funders.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Genomic libraries for Illumina sequencing were prepared (paired-end libraries, 2×300 bp) using the Nextera XT DNA v3 MiSeq sequencing kit.”
The paper names specific instruments and kits used to produce the data. [majority verdict 'yes' (3/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“Two supplementary tables are available with the online version of this article.”
Variable definitions reside in supplementary tables inside the article, not in a documentation object shipped with the data. [majority verdict 'partial' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.241
From this paper's citation signal
Citation Network Contribution
0.122
From 2 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 4 citers.
Centers for Disease Control and Prevention
Grant: 5U51IP000155
Sanofi Pasteur
Grant: PER00059
National Institutes of Health
Grant: D43TW011255
NHGRI NIH HHS
Grant: U54 HG009824
NCIRD CDC HHS
Grant: U51 IP000155
National Institutes of Health
Grant: 5U51IP000155-03
South African Preparedness for Rapid Detection of Highly Pathogenic Avian Influen
National Institutes of Health
Grant: 5D43TW011255-03
South Africa-Pittsburgh Public Health Genomic Epidemiology Research Training Program (SAPPHGenE)
Wellcome Trust
FWCI
0.58
Citation Percentile
0.6%
Citation Trend
Fields of Study
MeSH Terms
Keywords
Sustainable Development Goals