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Error correction enables use of Oxford Nanopore technology for reference-free transcriptome analysis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.07.897512Source: DataRank Database

Error correction enables use of Oxford Nanopore technology for reference-free transcriptome analysis is a research paper published in bioRxiv (Cold Spring Harbor Laboratory) (2020). On theSindex it has a DataRank of 0. It has been cited 25 times.

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Open Access25 citations

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datarank_citation_only_1hop_v6· scope data_onlyMethodology

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Enrichment:Funding (5 grants)OA: greenTopics (41)IDs (PubMed, OpenAlex)SDGs (1)

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Open Access

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Authors (4)

Botond Sipos ORCID,Phillip James,Paul Medvedev ORCID,Kristoffer Sahlin ORCID

Live enrichment

PubMed:19162232 OpenAlex:https://openalex.org/W2999510651

National Science Foundation

Grant: 1439057

XPS: FULL: DSD: End-to-end Acceleration of Genomic Workflows on Emerging Heterogeneous Supercomputers

National Institutes of Health

Grant: 5U24HG010263-03

Implementing the Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL)

National Institutes of Health

Grant: 5U24HG010263-08

Expanding the AnVIL (Analysis, Visualization, and Informatics Lab-space)

National Institutes of Health

Grant: 5R01GM130691-03

Y Chromosome Evolution

National Science Foundation

Grant: 1453527

CAREER: De Novo Assembly of Large Genomic Data

greenLicense: cc-by-nc-nd

repositoryhttps://www.biorxiv.org/content/biorxiv/early/2020/11/09/2020.01.07.897512.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/2020.01.07.897512

repositoryhttps://doi.org/10.1101/2020.01.07.897512

repositoryhttps://www.nature.com/articles/s41467-020-20340-8

Fields of Study

Genomics and Phylogenetic StudiesMolecular Biology Techniques and ApplicationsGene expression and cancer classification0301 basic medicine0303 health sciences0206 medical engineering02 engineering and technology03 medical and health sciences

Keywords

Nanopore sequencingComputer scienceComputational biologyAlternative splicingError detection and correctionTranscriptomeRNA splicingComplementary DNASequence (biology)DNA sequencingBiologyAlgorithmGeneGeneticsGene isoformGene expressionScienceGene Expression ProfilingQExonsPolymorphism, Single NucleotideArticleNanoporesDrosophila melanogasterGene Expression RegulationAnimalsHeuristicsNanotechnologyProtein IsoformsRNA Splice SitesRNA, MessengerAlgorithmsAlleles

Sustainable Development Goals

SDG 3: 3. Good health