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PaintSHOP enables the interactive design of transcriptome- and genome-scale oligonucleotide FISH experiments

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.05.188797Source: DataRank Database

PaintSHOP enables the interactive design of transcriptome- and genome-scale oligonucleotide FISH experiments is a research paper published in bioRxiv (Cold Spring Harbor Laboratory) (2020). On theSindex it has a DataRank of 0. It has been cited 12 times.

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Open Access12 citations

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datarank_citation_only_1hop_v6· scope data_onlyMethodology

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Enrichment:Funding (2 grants)OA: greenTopics (30)IDs (PubMed, OpenAlex)SDGs (1)

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Open Access

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Reusable (0/3)

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Authors (9)

Jennie Close ORCID,Conor K. Camplisson ORCID,Sahar Attar ORCID,Ryan Chern ORCID,Yuzhen Liu ORCID

Live enrichment

PubMed:19965766 OpenAlex:https://openalex.org/W3039131424

National Institutes of Health

Grant: 1S10OD016240-01A1

Leica SP8 WWL Confocal Microscope

National Institutes of Health

Grant: 1R35GM137916-01

Probing the dynamics of chromosome organization in single cells

greenLicense: cc-by-nc

repositoryhttps://www.biorxiv.org/content/biorxiv/early/2020/07/06/2020.07.05.188797.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/2020.07.05.188797

repositoryhttps://doi.org/10.1101/2020.07.05.188797

https://doi.org/10.1038/s41592-021-01187-3

Fields of Study

Single-cell and spatial transcriptomicsAdvanced biosensing and bioanalysis techniquesGenomics and Phylogenetic Studies0301 basic medicine0206 medical engineering02 engineering and technology03 medical and health sciences

Keywords

WorkflowComputer sciencePipeline (software)Oligomer restrictionGenomeOligonucleotideComputational biologyProcess (computing)Fish <Actinopterygii>Resource (disambiguation)BiologyGeneDatabaseGeneticsProgramming languageGenome, HumanArticleChromosome PaintingHumansOligonucleotide ProbesTranscriptomeIn Situ Hybridization, FluorescenceRepetitive Sequences, Nucleic Acid

Sustainable Development Goals

SDG 14: 14. Life underwater