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Sparcle: assigning transcripts to cells in multiplexed images

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.13.431099Source: DataRank Database

Sparcle: assigning transcripts to cells in multiplexed images is a research paper published in bioRxiv (Cold Spring Harbor Laboratory) (2021). On theSindex it has a DataRank of 0. It has been cited 11 times.

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Open Access11 citations

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datarank_citation_only_1hop_v6· scope data_onlyMethodology

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Enrichment:Funding (4 grants)OA: greenTopics (20)IDs (PubMed, OpenAlex)

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Accessible (1/2)

Open Access

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Authors (3)

Tal Nawy ORCID,Dana Pe’er ORCID,Sandhya Prabhakaran ORCID

Live enrichment

PubMed:19022398 OpenAlex:https://openalex.org/W3129453486

National Institutes of Health

Grant: 2P30CA008748-43

MOUSE GENETICS

National Institutes of Health

Grant: 5U54CA209975-02

The CSBC Research Center for Cancer Systems Immunology at MSKCC

National Institutes of Health

Grant: 7DP1HD084071-04

Single cell mapping of developmental trajectories underlying health and disease

National Institutes of Health

Grant: 5U2CCA233284-04

Transition to Metastatic State: Lung Cancer, Pancreatic Cancer and Brain Metastasis

greenLicense: cc-by

repositoryhttps://www.biorxiv.org/content/biorxiv/early/2021/02/14/2021.02.13.431099.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/2021.02.13.431099

repositoryhttps://doi.org/10.1101/2021.02.13.431099

https://dx.doi.org/10.1101/2021.02.13.431099

Fields of Study

Single-cell and spatial transcriptomicsCell Image Analysis TechniquesAdvanced Fluorescence Microscopy Techniques0206 medical engineering02 engineering and technology

Keywords

SegmentationComputational biologyMultiplexingGeneProbabilistic logicNoise (video)TranscriptomeGene expressionComputer scienceBiologyFluorescence in situ hybridizationPattern recognition (psychology)Artificial intelligenceGeneticsImage (mathematics)