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Chromatin interaction aware gene regulatory modeling with graph attention networks

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.31.437978Source: DataRank Database

Chromatin interaction aware gene regulatory modeling with graph attention networks is a research paper published in bioRxiv (Cold Spring Harbor Laboratory) (2021). On theSindex it has a DataRank of 0. It has been cited 17 times.

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Enrichment:Funding (3 grants)OA: closedTopics (33)IDs (PubMed, OpenAlex)

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Authors (3)

Merve Şahin ORCID,Christina S. Leslie ORCID,Alireza Karbalayghareh ORCID

Live enrichment

PubMed:30945415 OpenAlex:https://openalex.org/W3151332744

National Institutes of Health

Grant: 5U01DK128852-05

Discovery of diabetes-relevant ÃÂ² cell enhancers through 4D enhancer mapping, integrative analysis, and large-scale CRISPRi perturbation screens

National Institutes of Health

Grant: 5U01HG012103-03

Deciphering the Genomics of Gene Network Regulation of T Cell and Fibroblast States in Autoimmune Inflammation

National Institutes of Health

Grant: 5U01HG009395-03

Encoding genomic architecture in the encyclopedia: linking DNA elements, chromatin state, and gene expression in 3D

closedLicense: http://creativecommons.org/licenses/by-nc/4.0/This article, published in Genome Research, is available under a Creative Commons License (Attribution-NonCommercial 4.0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/ (http://creativecommons.org/licenses/by-nc/4.0/) .

publisherhttps://syndication.highwire.org/content/doi/10.1101/2021.03.31.437978

repositoryhttps://doi.org/10.1101/2021.03.31.437978

https://doi.org/10.1101/gr.275870.121

https://www.biorxiv.org/content/biorxiv/early/2021/04/02/2021.03.31.437978.full.pdf

https://pubmed.ncbi.nlm.nih.gov/35396274

Fields of Study

Genomics and Chromatin DynamicsRNA and protein synthesis mechanismsEpigenetics and DNA Methylation0301 basic medicine03 medical and health sciences0206 medical engineering02 engineering and technology

Keywords

EpigenomicsComputational biologyChromosome conformation captureChromatinEnhancerBiologyGene regulatory networkGeneticsGenomicsIn silicoGeneRegulatory sequenceDNA binding siteTranscription factorComputer scienceGenomeDNA methylationGene expressionPromoterBinding SitesGene Expression RegulationMethodGene Regulatory NetworksNeural Networks, ComputerRegulatory Sequences, Nucleic AcidTranscription Factors